Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   V6U63_RS07120 Genome accession   NZ_CP145861
Coordinates   1585882..1586808 (-) Length   308 a.a.
NCBI ID   WP_022496729.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580882..1591808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS07090 (V6U63_07085) - 1580961..1581755 (-) 795 WP_195914591.1 HAD family hydrolase -
  V6U63_RS07095 (V6U63_07090) - 1581937..1582314 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U63_RS07100 (V6U63_07095) - 1582319..1583017 (+) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U63_RS07105 (V6U63_07100) - 1583029..1583814 (+) 786 WP_195914590.1 ABC transporter permease -
  V6U63_RS07110 (V6U63_07105) amiF 1583865..1584794 (-) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  V6U63_RS07115 (V6U63_07110) amiE 1584787..1585872 (-) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS07120 (V6U63_07115) amiD 1585882..1586808 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U63_RS07125 (V6U63_07120) - 1586808..1588299 (-) 1492 Protein_1362 ABC transporter permease -
  V6U63_RS07130 (V6U63_07125) amiA 1588360..1590330 (-) 1971 WP_155123796.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34637.76 Da        Isoelectric Point: 9.7054

>NTDB_id=940388 V6U63_RS07120 WP_022496729.1 1585882..1586808(-) (amiD) [Streptococcus salivarius strain KSS3]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFINVVIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=940388 V6U63_RS07120 WP_022496729.1 1585882..1586808(-) (amiD) [Streptococcus salivarius strain KSS3]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCAGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTCATGTTGGGAATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTACGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACGGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCATTAACGTTGTTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTTGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCAGGTTTCTGGAACATGATTTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCTTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCAGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCCTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTACCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

99.351

100

0.994
  amiD Streptococcus thermophilus LMG 18311

95.779

100

0.958
  amiD Streptococcus thermophilus LMD-9

95.779

100

0.958