Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6U63_RS07110 Genome accession   NZ_CP145861
Coordinates   1583865..1584794 (-) Length   309 a.a.
NCBI ID   WP_014632821.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578865..1589794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS07085 (V6U63_07080) - 1580150..1580968 (-) 819 WP_002884514.1 Cof-type HAD-IIB family hydrolase -
  V6U63_RS07090 (V6U63_07085) - 1580961..1581755 (-) 795 WP_195914591.1 HAD family hydrolase -
  V6U63_RS07095 (V6U63_07090) - 1581937..1582314 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U63_RS07100 (V6U63_07095) - 1582319..1583017 (+) 699 WP_118058083.1 ABC transporter ATP-binding protein -
  V6U63_RS07105 (V6U63_07100) - 1583029..1583814 (+) 786 WP_195914590.1 ABC transporter permease -
  V6U63_RS07110 (V6U63_07105) amiF 1583865..1584794 (-) 930 WP_014632821.1 ATP-binding cassette domain-containing protein Regulator
  V6U63_RS07115 (V6U63_07110) amiE 1584787..1585872 (-) 1086 WP_349955229.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS07120 (V6U63_07115) amiD 1585882..1586808 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U63_RS07125 (V6U63_07120) - 1586808..1588299 (-) 1492 Protein_1362 ABC transporter permease -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35046.11 Da        Isoelectric Point: 6.5101

>NTDB_id=940386 V6U63_RS07110 WP_014632821.1 1583865..1584794(-) (amiF) [Streptococcus salivarius strain KSS3]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940386 V6U63_RS07110 WP_014632821.1 1583865..1584794(-) (amiF) [Streptococcus salivarius strain KSS3]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGTCGTG
CCATTATCGGTTTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGTATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCCAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAACACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATTGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAGATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.029

100

0.99
  amiF Streptococcus thermophilus LMG 18311

98.382

100

0.984
  amiF Streptococcus thermophilus LMD-9

98.058

100

0.981