Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   V6T01_RS01585 Genome accession   NZ_CP145856
Coordinates   292461..293150 (+) Length   229 a.a.
NCBI ID   WP_002883757.1    Uniprot ID   A0AB33ZE44
Organism   Streptococcus salivarius strain KSS1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 287461..298150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS01560 (V6T01_01555) - 287693..288523 (+) 831 WP_060973169.1 energy-coupling factor transporter transmembrane component T family protein -
  V6T01_RS01565 (V6T01_01560) - 288611..289282 (-) 672 WP_073949300.1 potassium channel family protein -
  V6T01_RS01570 (V6T01_01565) - 289322..290686 (-) 1365 WP_410541227.1 TrkH family potassium uptake protein -
  V6T01_RS01575 (V6T01_01570) rsmG 290755..291468 (-) 714 WP_175062726.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  V6T01_RS01580 (V6T01_01575) - 291768..292304 (+) 537 WP_175062727.1 DUF177 domain-containing protein -
  V6T01_RS01585 (V6T01_01580) covR 292461..293150 (+) 690 WP_002883757.1 response regulator transcription factor Regulator
  V6T01_RS01590 (V6T01_01585) covS 293147..294676 (+) 1530 WP_175062728.1 HAMP domain-containing histidine kinase Regulator
  V6T01_RS01595 (V6T01_01590) nrdR 294798..295277 (+) 480 WP_002883820.1 transcriptional regulator NrdR -
  V6T01_RS01600 (V6T01_01595) - 295274..296449 (+) 1176 WP_129852167.1 DnaD domain protein -
  V6T01_RS01605 (V6T01_01600) dnaI 296453..297355 (+) 903 WP_002883792.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26501.51 Da        Isoelectric Point: 4.6354

>NTDB_id=940163 V6T01_RS01585 WP_002883757.1 292461..293150(+) (covR) [Streptococcus salivarius strain KSS1]
MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDIEAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=940163 V6T01_RS01585 WP_002883757.1 292461..293150(+) (covR) [Streptococcus salivarius strain KSS1]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAAAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCAGACAACGGACGCGAAGGACTTGAAATGGCACTCGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTTGAAGTAACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGATTCAATCATGGACATTGTTGCTGGTTTGGACCGCGGTGCTGATGACTATATTGTAAAACCATTTGCGATTGA
AGAATTGTTGGCACGTATCCGTGCAACCTTCCGTCGCCAAGATATCGAAGCTGCTAAGAATGCACCAGCCAAAGCATCAA
CTTATCGTGATTTGAAATTGGATGTTCAAAACCGTACAGTTGTTCGTGGTGATGAAGCAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTGAGCAATATGAACCAAGTGATGACCCGTGAGGAACTCTTGCTTCAAGTTTGGAAGTA
TGATGACGCCATCGAAACAAACGTGGTAGATGTTTATATTCGTTACTTGCGTGGAAAAATCGACGTTCCAGGTAAGGAAT
CATATATTCAAACAGTACGAGGAATGGGTTACGTTATCCGTGAAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

100

100

1
  covR Lactococcus lactis subsp. lactis strain DGCC12653

68.421

99.563

0.681
  vicR Streptococcus mutans UA159

45.923

100

0.467
  micA Streptococcus pneumoniae Cp1015

44.156

100

0.445