Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6T01_RS00360 Genome accession   NZ_CP145856
Coordinates   60076..61215 (+) Length   379 a.a.
NCBI ID   WP_002889600.1    Uniprot ID   J7SI42
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55076..66215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS00340 (V6T01_00340) - 57141..57362 (+) 222 WP_073690141.1 hypothetical protein -
  V6T01_RS00345 (V6T01_00345) ruvA 57520..58110 (+) 591 WP_013989915.1 Holliday junction branch migration protein RuvA -
  V6T01_RS00350 (V6T01_00350) - 58119..58673 (+) 555 WP_073951167.1 DNA-3-methyladenine glycosylase I -
  V6T01_RS00355 (V6T01_00355) cinA 58770..60035 (+) 1266 WP_410533800.1 competence/damage-inducible protein A Machinery gene
  V6T01_RS00360 (V6T01_00360) recA 60076..61215 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  V6T01_RS00365 (V6T01_00365) spx 61383..61781 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40925.43 Da        Isoelectric Point: 4.7970

>NTDB_id=940153 V6T01_RS00360 WP_002889600.1 60076..61215(+) (recA) [Streptococcus salivarius strain KSS1]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDSVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=940153 V6T01_RS00360 WP_002889600.1 60076..61215(+) (recA) [Streptococcus salivarius strain KSS1]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGATGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAGGTTCAGGTTATGA
GCTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTAGCCCTCCATGCTGTTGCTCAGACACAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCAGAACATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATCGATGAGCTTCTTTTATCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCTGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCCTTGGTACCTCGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTTGGGCTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTATCTGCATCTATTAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACACCTGGTGGACGTGCTCTGAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATCAAGGTTGTCAAAAATAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTCGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGATTTAGGAATTATTCAAAAAGCCGGAGCATGGTTCTCATATAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCTAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATAGTGTTGAAGAAGCACAAGTTGAAGAAACGTCTGATGAACTTGTTTTGGACCTTGATTCAA
CCATTGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7SI42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.556

100

0.905
  recA Streptococcus pyogenes NZ131

90.237

100

0.902
  recA Streptococcus mitis NCTC 12261

86.352

100

0.868
  recA Streptococcus mitis SK321

86.352

100

0.868
  recA Streptococcus pneumoniae Rx1

85.195

100

0.865
  recA Streptococcus pneumoniae D39

85.195

100

0.865
  recA Streptococcus pneumoniae R6

85.195

100

0.865
  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865
  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

67.33

92.876

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594
  recA Glaesserella parasuis strain SC1401

56.486

97.625

0.551
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541
  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536
  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

85.752

0.522
  recA Vibrio cholerae strain A1552

60.923

85.752

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515
  recA Helicobacter pylori 26695

55.331

91.557

0.507
  recA Helicobacter pylori strain NCTC11637

55.331

91.557

0.507
  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499
  recA Ralstonia pseudosolanacearum GMI1000

59.306

83.641

0.496