Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6667_RS09060 Genome accession   NZ_CP145811
Coordinates   1949589..1950746 (-) Length   385 a.a.
NCBI ID   WP_274571708.1    Uniprot ID   A0A9X4E1M1
Organism   Neisseria leonii strain CCUG 45853     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1944589..1955746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6667_RS09035 (V6667_09035) - 1945372..1945746 (-) 375 WP_274571713.1 helix-turn-helix domain-containing protein -
  V6667_RS09040 (V6667_09040) - 1946003..1946218 (+) 216 WP_338809238.1 hypothetical protein -
  V6667_RS09045 (V6667_09045) - 1946238..1946576 (+) 339 WP_274571711.1 hypothetical protein -
  V6667_RS09050 (V6667_09050) topA 1946650..1948959 (-) 2310 WP_338809239.1 type I DNA topoisomerase -
  V6667_RS09055 (V6667_09055) - 1949052..1949507 (-) 456 WP_274571709.1 DUF494 family protein -
  V6667_RS09060 (V6667_09060) dprA 1949589..1950746 (-) 1158 WP_274571708.1 DNA-processing protein DprA Machinery gene
  V6667_RS09065 (V6667_09065) def 1950881..1951381 (+) 501 WP_274571707.1 peptide deformylase -
  V6667_RS09070 (V6667_09070) fmt 1951450..1952376 (+) 927 WP_338809240.1 methionyl-tRNA formyltransferase -
  V6667_RS09075 (V6667_09075) rsmB 1952373..1953632 (+) 1260 WP_338809241.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  V6667_RS09080 (V6667_09080) - 1953598..1954203 (+) 606 WP_274571704.1 DUF4390 domain-containing protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 40087.61 Da        Isoelectric Point: 6.4978

>NTDB_id=940027 V6667_RS09060 WP_274571708.1 1949589..1950746(-) (dprA) [Neisseria leonii strain CCUG 45853]
MQQEERDAWLCLALLPQVGADTFARLLAHFGSARSAWRAGIGEAEICLPRSAAREAWRNRRAEAEAAAEAALAWVRETEN
ARLLLSCDPDFPLMLHEGITPPPLLFVRGNVAMLHRPALAVVGSRHATPQALRIARDFSQALSAAGIVVVSGMASGIDTA
AHQGALAGGGGTAAVWGTGIDRVYPAANRSLAHDIAASGVIVSEFPLGARPLAGHFPRRNRIIAALAQAVLVVEAAVESG
SLITARLAAEMGREVLAVPGSIDNPHSKGCHKLIKDGAKLTECLEDILIECPGLLQTARSSAYAIKNNAPPDGGGAERPQ
AVFQTAGSGGDGDGLLDAMGFDSVHPDSLAERLNRPAADVYAGLLELELAGRVAAAGGGRYQRTG

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=940027 V6667_RS09060 WP_274571708.1 1949589..1950746(-) (dprA) [Neisseria leonii strain CCUG 45853]
ATGCAGCAGGAAGAACGTGATGCGTGGTTGTGTCTGGCTTTGTTGCCGCAGGTTGGGGCGGATACGTTCGCACGTCTGCT
GGCACATTTCGGTTCGGCACGTTCGGCATGGCGCGCAGGGATTGGCGAAGCGGAAATCTGCCTGCCGCGCAGCGCGGCGC
GCGAAGCCTGGCGCAACCGCCGCGCCGAAGCCGAAGCTGCGGCCGAAGCGGCACTGGCTTGGGTGCGCGAAACCGAAAAC
GCCCGCCTGCTGCTCTCTTGCGACCCCGATTTTCCGCTCATGCTCCACGAAGGCATCACCCCGCCTCCGCTGCTGTTTGT
CCGCGGCAATGTAGCGATGCTGCACCGCCCCGCGCTGGCGGTAGTCGGCAGCCGCCATGCCACGCCGCAGGCTCTGCGTA
TCGCGCGCGACTTTTCGCAGGCTTTGTCGGCAGCGGGGATAGTAGTGGTTTCGGGCATGGCTTCCGGCATCGACACCGCC
GCCCATCAGGGCGCGCTGGCGGGCGGCGGCGGAACCGCAGCCGTGTGGGGGACGGGCATCGACCGCGTTTACCCCGCCGC
CAACCGCAGTCTGGCACACGATATTGCCGCATCGGGCGTGATTGTGTCGGAATTTCCGCTCGGCGCGCGGCCGCTGGCCG
GGCATTTCCCGCGCCGCAACCGCATCATCGCCGCCTTGGCGCAGGCGGTACTGGTGGTGGAGGCGGCCGTCGAATCCGGT
TCGCTGATTACTGCGCGGCTGGCCGCCGAAATGGGCCGAGAAGTGCTGGCCGTGCCGGGTTCCATCGACAACCCGCACAG
CAAAGGCTGCCACAAGCTGATTAAAGACGGCGCAAAATTGACCGAATGTCTGGAAGATATTCTGATAGAGTGTCCGGGGC
TATTGCAAACCGCCCGATCTTCGGCATATGCTATAAAAAATAACGCGCCGCCCGATGGCGGCGGGGCAGAGCGGCCGCAG
GCCGTTTTTCAGACGGCCGGAAGCGGCGGCGACGGGGACGGGCTGCTGGACGCGATGGGCTTTGATTCGGTACACCCAGA
CAGTCTGGCCGAGCGTCTCAACCGCCCCGCAGCCGATGTTTATGCCGGATTGCTGGAATTGGAGTTGGCCGGCAGGGTGG
CGGCGGCGGGCGGCGGCCGTTACCAGCGTACCGGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(329-379)

DNA recombination-mediator protein A (DNA_processg_A)

(78-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

60.969

100

0.621
  dprA Neisseria gonorrhoeae MS11

60.714

100

0.618
  dprA Neisseria meningitidis strain C311

59

100

0.613
  dprA Neisseria meningitidis MC58

59

100

0.613
  dprA Vibrio cholerae strain A1552

38.987

100

0.4
  dprA Vibrio campbellii strain DS40M4

39.153

98.182

0.384