Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V6090_RS19835 Genome accession   NZ_CP145798
Coordinates   4348964..4350478 (+) Length   504 a.a.
NCBI ID   WP_406595712.1    Uniprot ID   -
Organism   Aeromonas veronii strain CARB25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4343964..4355478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6090_RS19820 (V6090_19820) - 4345701..4346645 (-) 945 WP_406595711.1 branched-chain amino acid transaminase -
  V6090_RS19825 (V6090_19825) ilvM 4346658..4346936 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  V6090_RS19830 (V6090_19830) ilvG 4346933..4348579 (-) 1647 WP_245132247.1 acetolactate synthase 2 catalytic subunit -
  V6090_RS19835 (V6090_19835) comM 4348964..4350478 (+) 1515 WP_406595712.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V6090_RS19840 (V6090_19840) - 4350605..4351504 (+) 900 WP_304520343.1 acyltransferase -
  V6090_RS19845 (V6090_19845) - 4351511..4352476 (+) 966 WP_058056256.1 acyltransferase -
  V6090_RS19850 (V6090_19850) - 4352401..4352907 (-) 507 WP_304520344.1 DUF523 domain-containing protein -
  V6090_RS19855 (V6090_19855) - 4352904..4353554 (-) 651 WP_203119824.1 NrtR DNA-binding winged helix domain-containing protein -
  V6090_RS19860 (V6090_19860) - 4353629..4354264 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54579.47 Da        Isoelectric Point: 7.4493

>NTDB_id=939898 V6090_RS19835 WP_406595712.1 4348964..4350478(+) (comM) [Aeromonas veronii strain CARB25]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFIDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=939898 V6090_RS19835 WP_406595712.1 4348964..4350478(+) (comM) [Aeromonas veronii strain CARB25]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGACCTACCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACCGGAGAGATCCGCCCTGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCACGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAACTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATACGAGCTGCCGCTGCCGGATCCCCAAAGCGCGGAGAGCCTGCCAGATGT
GCCGGACCTGCAGGATGTGATTGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGGCCATACCG
CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTAGTGGGAGGCGGCAGCCACCCCAGGCCCGGCGAAATATCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAGCCGCTGGAGACG
GGTCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTATCGACCGCTTTGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCACGGGAGCGCATGCTGAGTCGCAACGGCAAGCTCAACAATCT
GCTTGATAGCCGCGAGATTGAGGATATTTGCCGACTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACCGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Haemophilus influenzae Rd KW20

61.462

100

0.617
  comM Glaesserella parasuis strain SC1401

60.75

100

0.611
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.462