NTDB

Overview

Name	micA	Type	Regulator
Locus tag	LBA42_RS01195	Genome accession	NZ_CP145437
Coordinates	225047..225751 (+)	Length	234 a.a.
NCBI ID	WP_000722076.1	Uniprot ID	Q9S1K0
Organism	Streptococcus pneumoniae strain HAC 39-1996
Function	repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 220047..230751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LBA42_RS01170 (LBA42_01170)	coaC	220336..220887 (-)	552	WP_001284128.1	phosphopantothenoylcysteine decarboxylase	-
LBA42_RS01175 (LBA42_01175)	coaB	220899..221588 (-)	690	WP_000699494.1	phosphopantothenate--cysteine ligase	-
LBA42_RS01180 (LBA42_01180)	-	221818..223488 (+)	1671	WP_000845285.1	formate--tetrahydrofolate ligase	-
LBA42_RS01185 (LBA42_01185)	-	223594..223719 (-)	126	WP_001818232.1	hypothetical protein	-
LBA42_RS01190 (LBA42_01190)	mutY	223816..224991 (+)	1176	WP_000886152.1	A/G-specific adenine glycosylase	-
LBA42_RS01195 (LBA42_01195)	micA	225047..225751 (+)	705	WP_000722076.1	response regulator YycF	Regulator
LBA42_RS01200 (LBA42_01200)	micB	225744..227093 (+)	1350	WP_000886213.1	cell wall metabolism sensor histidine kinase VicK	Regulator
LBA42_RS01205 (LBA42_01205)	vicX	227095..227904 (+)	810	WP_001289493.1	MBL fold metallo-hydrolase	Regulator
LBA42_RS01215 (LBA42_01215)	-	229417..229659 (+)	243	WP_000208080.1	DUF6290 family protein	-
LBA42_RS01220 (LBA42_01220)	-	229661..229915 (+)	255	WP_001809704.1	type II toxin-antitoxin system RelE/ParE family toxin	-
LBA42_RS01225 (LBA42_01225)	-	229962..230705 (+)	744	Protein_242	ion channel	-

Sequence

Protein

Download Length: 234 a.a. Molecular weight: 26815.63 Da Isoelectric Point: 4.7164

                                >NTDB_id=938675 LBA42_RS01195 WP_000722076.1 225047..225751(+) (micA) [Streptococcus pneumoniae strain HAC 39-1996]

MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA

KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLT

HREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA

Nucleotide

Download Length: 705 bp

                                >NTDB_id=938675 LBA42_RS01195 WP_000722076.1 225047..225751(+) (micA) [Streptococcus pneumoniae strain HAC 39-1996]

ATGAAAAAAATACTAATTGTAGATGATGAGAAACCAATCTCGGATATTATCAAGTTTAATATGACCAAGGAAGGTTACGA

AGTTGTAACTGCTTTTAATGGTCGTGAAGCGCTAGAGCAATTTGAAGCAGAGCAACCAGATATTATTATTCTGGATTTGA

TGCTTCCAGAAATTGATGGTTTAGAAGTTGCTAAGACCATTCGTAAGACAAGCAGTGTGCCCATTCTTATGCTTTCAGCC

AAAGATAGTGAATTTGATAAGGTTATCGGTTTGGAACTTGGGGCAGATGACTATGTAACGAAACCCTTCTCCAATCGTGA

GTTGCAGGCGCGTGTTAAAGCTCTTCTGCGTCGTTCTCAACCTATGCCAGTAGATGGTCAGGAAGCAGATAGTAAACCTC

AACCTATCCAAATTGGGGATTTAGAAATTGTTCCAGACGCCTACGTGGCTAAAAAATATGGCGAAGAACTAGACTTAACC

CATCGTGAATTTGAGCTTTTGTATCATTTAGCATCGCATACAGGTCAAGTCATCACGCGCGAACACTTGCTTGAGACTGT

CTGGGGTTATGACTATTTTGGTGATGTCCGTACAGTTGATGTGACTGTACGACGTCTGCGTGAGAAGATTGAAGATACGC

CCAGCCGACCAGAGTATATCTTGACGCGCCGTGGTGTAGGGTATTACATGAGAAATAATGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
PDB	1NXS
PDB	2A9O
PDB	2A9P

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
micA	Streptococcus pneumoniae Cp1015	100	100	1
vicR	Streptococcus mutans UA159	78.541	99.573	0.782
covR	Streptococcus salivarius strain HSISS4	44.156	98.718	0.436
covR	Lactococcus lactis subsp. lactis strain DGCC12653	43.478	98.291	0.427
scnR	Streptococcus mutans UA159	38.197	99.573	0.38

Detailed information NTG0938675