Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ANSO36C_RS27970 Genome accession   NZ_AP025732
Coordinates   6191615..6191980 (+) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc cf. commune SO-36     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6186615..6196980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANSO36C_RS27950 (ANSO36C_56840) - 6187039..6187431 (+) 393 WP_251955951.1 helix-turn-helix domain-containing protein -
  ANSO36C_RS27955 (ANSO36C_56850) - 6187389..6187985 (+) 597 WP_251955950.1 IS630 family transposase -
  ANSO36C_RS27960 (ANSO36C_56860) hmpF 6188024..6189784 (-) 1761 WP_251957415.1 pilus motility taxis protein HmpF -
  ANSO36C_RS27965 (ANSO36C_56870) - 6190155..6191333 (+) 1179 WP_251957416.1 response regulator -
  ANSO36C_RS27970 (ANSO36C_56880) pilH 6191615..6191980 (+) 366 WP_069073698.1 response regulator transcription factor Machinery gene
  ANSO36C_RS27975 (ANSO36C_56890) - 6191994..6192524 (+) 531 WP_251957417.1 chemotaxis protein CheW -
  ANSO36C_RS27980 (ANSO36C_56900) - 6192539..6195475 (+) 2937 WP_251957418.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=93825 ANSO36C_RS27970 WP_069073698.1 6191615..6191980(+) (pilH) [Nostoc cf. commune SO-36]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=93825 ANSO36C_RS27970 WP_069073698.1 6191615..6191980(+) (pilH) [Nostoc cf. commune SO-36]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCAACTGGCCTAAC
AGTTACCCATGCCAGTGACGGATTAGAAGCATTGGAGGCAATCCAAATAGCACCTCCCGATTTAGTGGTATTGGATATTG
TTATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGATTAAAATCCGATCCAAAAACCCAAAATGTCCCTGTGGTTATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTACTGGGGTATGAAGCAGGGTGCAGACGCTTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment