Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5G09_RS02355 Genome accession   NZ_CP145088
Coordinates   452978..453451 (+) Length   157 a.a.
NCBI ID   WP_192941311.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_B_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447978..458451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G09_RS02330 (V5G09_02330) dnaB 448492..449895 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5G09_RS02335 (V5G09_02335) pilH 450152..450817 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G09_RS02340 (V5G09_02340) pilV 450849..451457 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5G09_RS02345 (V5G09_02345) pilJ 451454..452398 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  V5G09_RS02350 (V5G09_02350) pilK 452377..452976 (+) 600 WP_082295400.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G09_RS02355 (V5G09_02355) pilL 452978..453451 (+) 474 WP_192941311.1 PilX family type IV pilin Machinery gene
  V5G09_RS02360 (V5G09_02360) - 453521..453829 (-) 309 WP_010359926.1 AzlD family protein -
  V5G09_RS02365 (V5G09_02365) - 453826..454536 (-) 711 Protein_461 AzlC family ABC transporter permease -
  V5G09_RS02370 (V5G09_02370) dut 454702..455154 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G09_RS02375 (V5G09_02375) dapC 455226..456413 (+) 1188 WP_071197481.1 succinyldiaminopimelate transaminase -
  V5G09_RS02380 (V5G09_02380) yaaA 456569..457348 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17481.26 Da        Isoelectric Point: 9.7225

>NTDB_id=937131 V5G09_RS02355 WP_192941311.1 452978..453451(+) (pilL) [Neisseria gonorrhoeae strain WHO_B_2024]
MEQKGFTLIEVMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVLGYKM
NPKIAKKYSVSVKFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYSDTLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=937131 V5G09_RS02355 WP_192941311.1 452978..453451(+) (pilL) [Neisseria gonorrhoeae strain WHO_B_2024]
ATGGAGCAAAAAGGGTTTACATTGATTGAGGTAATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTCGGACACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

94.268

100

0.943
  pilX Neisseria meningitidis 8013

84.713

100

0.847