Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   V5G09_RS02345 Genome accession   NZ_CP145088
Coordinates   451454..452398 (+) Length   314 a.a.
NCBI ID   WP_048339587.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_B_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 446454..457398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G09_RS02320 (V5G09_02320) - 447006..447515 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G09_RS02325 (V5G09_02325) - 447747..448328 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G09_RS02330 (V5G09_02330) dnaB 448492..449895 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5G09_RS02335 (V5G09_02335) pilH 450152..450817 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G09_RS02340 (V5G09_02340) pilV 450849..451457 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5G09_RS02345 (V5G09_02345) pilJ 451454..452398 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  V5G09_RS02350 (V5G09_02350) pilK 452377..452976 (+) 600 WP_082295400.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G09_RS02355 (V5G09_02355) pilL 452978..453451 (+) 474 WP_192941311.1 PilX family type IV pilin Machinery gene
  V5G09_RS02360 (V5G09_02360) - 453521..453829 (-) 309 WP_010359926.1 AzlD family protein -
  V5G09_RS02365 (V5G09_02365) - 453826..454536 (-) 711 Protein_461 AzlC family ABC transporter permease -
  V5G09_RS02370 (V5G09_02370) dut 454702..455154 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G09_RS02375 (V5G09_02375) dapC 455226..456413 (+) 1188 WP_071197481.1 succinyldiaminopimelate transaminase -
  V5G09_RS02380 (V5G09_02380) yaaA 456569..457348 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 314 a.a.        Molecular weight: 34479.21 Da        Isoelectric Point: 8.7147

>NTDB_id=937129 V5G09_RS02345 WP_048339587.1 451454..452398(+) (pilJ) [Neisseria gonorrhoeae strain WHO_B_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKNSPFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASAATTVVSSCG
AISKPSKQILTLEDAKKELEILNQDKEQNGNIARQRHVVNAYAVGKIAGEEGLFRFQLDDKGKWGNPQLLAKKVKRMDVR
YIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 945 bp        

>NTDB_id=937129 V5G09_RS02345 WP_048339587.1 451454..452398(+) (pilJ) [Neisseria gonorrhoeae strain WHO_B_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAAACTCTCCTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGGC
GCAATATCGAAACCGAGTAAGCAAATCCTTACTTTAGAAGATGCAAAAAAAGAATTGGAGATTCTGAATCAGGATAAGGA
GCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAAACGTATGGATGTGCGG
TATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAG
CTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTTCTTCAGATAATATTA
TTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

91.401

100

0.914