Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5G09_RS02350 Genome accession   NZ_CP145088
Coordinates   452377..452976 (+) Length   199 a.a.
NCBI ID   WP_082295400.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_B_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447377..457976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G09_RS02325 (V5G09_02325) - 447747..448328 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G09_RS02330 (V5G09_02330) dnaB 448492..449895 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5G09_RS02335 (V5G09_02335) pilH 450152..450817 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G09_RS02340 (V5G09_02340) pilV 450849..451457 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5G09_RS02345 (V5G09_02345) pilJ 451454..452398 (+) 945 WP_048339587.1 PilW family protein Machinery gene
  V5G09_RS02350 (V5G09_02350) pilK 452377..452976 (+) 600 WP_082295400.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G09_RS02355 (V5G09_02355) pilL 452978..453451 (+) 474 WP_192941311.1 PilX family type IV pilin Machinery gene
  V5G09_RS02360 (V5G09_02360) - 453521..453829 (-) 309 WP_010359926.1 AzlD family protein -
  V5G09_RS02365 (V5G09_02365) - 453826..454536 (-) 711 Protein_461 AzlC family ABC transporter permease -
  V5G09_RS02370 (V5G09_02370) dut 454702..455154 (+) 453 WP_003687923.1 dUTP diphosphatase -
  V5G09_RS02375 (V5G09_02375) dapC 455226..456413 (+) 1188 WP_071197481.1 succinyldiaminopimelate transaminase -
  V5G09_RS02380 (V5G09_02380) yaaA 456569..457348 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21670.66 Da        Isoelectric Point: 8.0862

>NTDB_id=937130 V5G09_RS02350 WP_082295400.1 452377..452976(+) (pilK) [Neisseria gonorrhoeae strain WHO_B_2024]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVKGKPTVEAVKRSCPANSASLCIDNKGMEYKKGTAGVSKMPRYII
EYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=937130 V5G09_RS02350 WP_082295400.1 452377..452976(+) (pilK) [Neisseria gonorrhoeae strain WHO_B_2024]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
TATGATAGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTG
CCAGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGGCAGGCGTCAGCAAAATGCCGCGCTATATTATC
GAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

90.148

100

0.92