Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   PG338_RS07435 Genome accession   NZ_CP168321
Coordinates   1578133..1579155 (-) Length   340 a.a.
NCBI ID   WP_004916525.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573133..1584155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG338_RS07410 (PG338_007410) - 1573412..1573822 (+) 411 WP_004916514.1 VanZ family protein -
  PG338_RS07415 (PG338_007415) uvrC 1573812..1575602 (-) 1791 WP_015345294.1 excinuclease ABC subunit UvrC Machinery gene
  PG338_RS07420 (PG338_007420) - 1575622..1576611 (-) 990 WP_004916518.1 cation diffusion facilitator family transporter -
  PG338_RS07425 (PG338_007425) coaE 1576624..1577214 (-) 591 WP_004916520.1 dephospho-CoA kinase -
  PG338_RS07430 (PG338_007430) - 1577230..1578096 (-) 867 WP_004916523.1 MBL fold metallo-hydrolase -
  PG338_RS07435 (PG338_007435) ruvB 1578133..1579155 (-) 1023 WP_004916525.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PG338_RS07440 (PG338_007440) - 1579319..1579825 (-) 507 WP_004916526.1 ferritin -
  PG338_RS07445 (PG338_007445) - 1579904..1580416 (-) 513 WP_004916529.1 NUDIX domain-containing protein -
  PG338_RS07450 (PG338_007450) xerD 1580421..1581332 (-) 912 WP_013447089.1 site-specific tyrosine recombinase XerD -
  PG338_RS07455 (PG338_007455) - 1581333..1581764 (-) 432 WP_013447090.1 dCMP deaminase family protein -
  PG338_RS07460 (PG338_007460) - 1581790..1582554 (-) 765 WP_004916537.1 enoyl-CoA hydratase/isomerase family protein -
  PG338_RS07465 (PG338_007465) - 1582567..1583718 (-) 1152 WP_004916539.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38002.65 Da        Isoelectric Point: 5.0754

>NTDB_id=935533 PG338_RS07435 WP_004916525.1 1578133..1579155(-) (ruvB) [Riemerella anatipestifer strain RCAD1242]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNISRAKNMGELF

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=935533 PG338_RS07435 WP_004916525.1 1578133..1579155(-) (ruvB) [Riemerella anatipestifer strain RCAD1242]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGGCAAAGGCGTACTTTGGATAATTTAGAAGTCTTTGTAGCAGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTTTGCATGGTCCTCCAGGGTTAGGGAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGC
GTGGGTTTTAAAGTAACCTCTGGTCCTGTTTTAGACAAACCTGGAAGTTTGGCAGGACTCCTTACCAACTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTACCTCTATTCCGCTATGGAAGACTACA
AGATAGATATTATGCTAGAAACAGGTCCTAATGCTCGTTCAGTACAAATCAATCTTAATCCGTTTACGTTGGTTGGAGCT
ACTACAAGAAGTGGTATGCTTACCAAACCAATGCTAGCGAGATTCGGTATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGTACTCCTAGAATTGCTAACGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGTCTTGATGATATGGACAACAA
AATTATGAGGGTGATGATAGAAAACTTCAAAGGGAAACCTGTGGGGATTTCTGCATTGGCGACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAGTAGAGCTAAAAATATGGGAGAGCTTTTCTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(258-329)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae R6

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae D39

57.143

92.647

0.529
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.508

92.647

0.524
  ruvB Synechocystis sp. PCC 6803

47.447

97.941

0.465
  ruvB Helicobacter pylori 26695

47.937

92.647

0.444