Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   PG338_RS07415 Genome accession   NZ_CP168321
Coordinates   1573812..1575602 (-) Length   596 a.a.
NCBI ID   WP_015345294.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD1242     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568812..1580602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG338_RS07400 (PG338_007400) - 1570679..1571677 (-) 999 WP_004916511.1 aminoglycoside phosphotransferase family protein -
  PG338_RS07405 (PG338_007405) lnt 1571711..1573354 (-) 1644 WP_004916512.1 apolipoprotein N-acyltransferase -
  PG338_RS07410 (PG338_007410) - 1573412..1573822 (+) 411 WP_004916514.1 VanZ family protein -
  PG338_RS07415 (PG338_007415) uvrC 1573812..1575602 (-) 1791 WP_015345294.1 excinuclease ABC subunit UvrC Machinery gene
  PG338_RS07420 (PG338_007420) - 1575622..1576611 (-) 990 WP_004916518.1 cation diffusion facilitator family transporter -
  PG338_RS07425 (PG338_007425) coaE 1576624..1577214 (-) 591 WP_004916520.1 dephospho-CoA kinase -
  PG338_RS07430 (PG338_007430) - 1577230..1578096 (-) 867 WP_004916523.1 MBL fold metallo-hydrolase -
  PG338_RS07435 (PG338_007435) ruvB 1578133..1579155 (-) 1023 WP_004916525.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PG338_RS07440 (PG338_007440) - 1579319..1579825 (-) 507 WP_004916526.1 ferritin -
  PG338_RS07445 (PG338_007445) - 1579904..1580416 (-) 513 WP_004916529.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69188.93 Da        Isoelectric Point: 9.0407

>NTDB_id=935532 PG338_RS07415 WP_015345294.1 1573812..1575602(-) (uvrC) [Riemerella anatipestifer strain RCAD1242]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLRNRVLSYFNKSQVGYKTKIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGESLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=935532 PG338_RS07415 WP_015345294.1 1573812..1575602(-) (uvrC) [Riemerella anatipestifer strain RCAD1242]
GTGAATGAAACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAGCCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAGAAATAGGGTGCTATCTTACTTCAATAAAAGTCAAGTGGGTTATAAGA
CCAAAATTATGGTTAAAAAAATCCATCGCTTGGAGATTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATTAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGCTGTGCATCAAAAA
TGAACCTTTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGTACACTTAATCTTTCTGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTGGAAAGTGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAATTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTATTTGGTATGGTGAGTGATGAAACGGCGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCAGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAGGTGGGCGACAAAAAGAGAATTGTAGAACTTTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTTCTTAGGCTTCCAGAAGAGCCAAGACACATTGAAGGCTTTGATAATTCTAATATTCAG
GGGACTAACCCTGTATCTGCCTGTGTCGTCTTTAAAGACGGTAAACCAAGCAAGAAGGATTATCGTATTTTCCATATCAA
GACCGTAGAAGGTCCTAACGACTTTGCTTCTATGGAAGAAGTGATTTACCGAAGATATAAAAGATATTTAGATGAAGGCG
AGTCTCTACCTCAACTGATTTTGATAGACGGCGGTAAGGGGCAGCTAAGCTCTGCCGTTAAAAGTTTAAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCCAAAAGGTTGGAAGAGCTATTTTTCCCTAACGACCCTATTCCTTTATA
TTTAGACAAAACTTCAGAAACACTTAAGGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAGTAAAGCACCACC
GTACTAGAAGAACCAACAGCACCATAAAATCAGAACTAGAAGAAATCCCAGGTGTTGGTGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACTTTAGAGGAAATTTTGGGCAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.627

98.993

0.372
  uvrC Streptococcus pneumoniae D39

37.627

98.993

0.372
  uvrC Streptococcus pneumoniae TIGR4

37.458

98.993

0.371