Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   V5G23_RS20685 Genome accession   NZ_CP144925
Coordinates   3942909..3943112 (-) Length   67 a.a.
NCBI ID   WP_003182112.1    Uniprot ID   A0A5Q3BNZ5
Organism   Bacillus licheniformis strain CP13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3937909..3948112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G23_RS20665 (V5G23_20665) - 3938171..3940276 (-) 2106 WP_011201659.1 hydantoinase/oxoprolinase family protein -
  V5G23_RS20670 (V5G23_20670) - 3940301..3941650 (-) 1350 WP_011198001.1 cytosine permease -
  V5G23_RS20675 (V5G23_20675) - 3941683..3942069 (-) 387 WP_009328433.1 OsmC family protein -
  V5G23_RS20680 (V5G23_20680) - 3942072..3942695 (-) 624 WP_009328434.1 TetR/AcrR family transcriptional regulator -
  V5G23_RS20685 (V5G23_20685) rok 3942909..3943112 (-) 204 WP_003182112.1 hypothetical protein Regulator
  V5G23_RS20690 (V5G23_20690) - 3943640..3944092 (+) 453 WP_003182104.1 DMT family transporter -
  V5G23_RS20695 (V5G23_20695) - 3944115..3944597 (+) 483 WP_003182102.1 DMT family transporter -
  V5G23_RS20705 (V5G23_20705) - 3945130..3945891 (+) 762 WP_017474794.1 N-acetylmuramoyl-L-alanine amidase -
  V5G23_RS20710 (V5G23_20710) - 3945946..3946914 (-) 969 WP_011197999.1 multidrug resistance efflux transporter family protein -
  V5G23_RS20715 (V5G23_20715) - 3946922..3947587 (-) 666 WP_009328436.1 GntR family transcriptional regulator -
  V5G23_RS20720 (V5G23_20720) - 3947632..3948096 (-) 465 WP_003182064.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 8116.34 Da        Isoelectric Point: 9.8619

>NTDB_id=935384 V5G23_RS20685 WP_003182112.1 3942909..3943112(-) (rok) [Bacillus licheniformis strain CP13]
MFNEREALRLRLEQLNNAEIQIIRELQSERKDIYSRLRELDRQKVSSSHHKKTLLELVDETVNLLKK

Nucleotide


Download         Length: 204 bp        

>NTDB_id=935384 V5G23_RS20685 WP_003182112.1 3942909..3943112(-) (rok) [Bacillus licheniformis strain CP13]
GTGTTCAACGAAAGAGAGGCGCTCCGATTAAGACTGGAGCAACTGAACAATGCCGAGATTCAGATCATACGCGAACTCCA
AAGTGAGCGGAAAGACATTTATTCCAGGCTGCGGGAATTAGATCGTCAAAAAGTTTCTTCATCACATCATAAAAAAACTT
TATTAGAGTTAGTCGATGAAACTGTAAATCTCTTGAAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q3BNZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

70.213

70.149

0.493