Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VZ068_RS19395 Genome accession   NZ_CP144460
Coordinates   4600335..4601855 (+) Length   506 a.a.
NCBI ID   WP_349656209.1    Uniprot ID   A0AAU7P7E1
Organism   Xanthomonas sp. 10-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4595335..4606855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZ068_RS19375 (VZ068_19380) - 4596151..4596807 (+) 657 WP_349656207.1 RIO1 family regulatory kinase/ATPase -
  VZ068_RS19380 (VZ068_19385) - 4596835..4598802 (-) 1968 WP_349656208.1 beta-N-acetylglucosaminidase domain-containing protein -
  VZ068_RS19385 (VZ068_19390) - 4599509..4599883 (-) 375 WP_276577329.1 P-II family nitrogen regulator -
  VZ068_RS19390 (VZ068_19395) - 4600035..4600319 (+) 285 WP_259157047.1 accessory factor UbiK family protein -
  VZ068_RS19395 (VZ068_19400) comM 4600335..4601855 (+) 1521 WP_349656209.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VZ068_RS19400 (VZ068_19405) - 4602234..4602743 (+) 510 WP_349656210.1 lipocalin family protein -
  VZ068_RS19405 (VZ068_19410) - 4603215..4603391 (-) 177 WP_349656211.1 hypothetical protein -
  VZ068_RS19410 (VZ068_19415) - 4603772..4605343 (+) 1572 WP_349656212.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53888.66 Da        Isoelectric Point: 8.2799

>NTDB_id=933967 VZ068_RS19395 WP_349656209.1 4600335..4601855(+) (comM) [Xanthomonas sp. 10-10]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFIGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTRQAPAAELAVAAVGAPALPDMADVRGQPHARRALEIAAAGCHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHHGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVDVPRLPPQALRTGN
VGEDSASVRARVVAARQRQLARGPLPNAQLDQPDTDRHCRLHNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDNSA
DIATHHLTEAIGYRKLDRALTAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=933967 VZ068_RS19395 WP_349656209.1 4600335..4601855(+) (comM) [Xanthomonas sp. 10-10]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCACCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGCCTTCCGTCCACCCAGATCGTGGGCCTGCCCGAGGCTGCGGTACGCGAATCGCGCGAGCGCGTACGTGCCGCCCTGC
TCTGCGCACAATTCGAATTCCCGGCCCGGCGGATCACCATCAATCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGATCTGCCGATCGCACTCGGCATTCTTGCGGCCAGTGGCCAGATCGATCGGCAGGCGCTGGCCGATTACGAATTCAT
CGGCGAACTCGCGCTGACCGGCGAGCTGCGTGGCGTCGATGGCGTGTTGCCGGCCGCCCTGGCTGCCGCGCAGGCCGGAC
GGCGGCTCATCGTGCCGCTGGCCAATGGCGCCGAGGCCGCCATTGCCGGACACGTCCAGGCCTTTACCGCGCGCACCCTG
CTGGAAGTCTGTGCCGCGCTCAACGGCACCCGGCAGGCGCCTGCTGCCGAGCTGGCGGTTGCCGCCGTGGGCGCACCTGC
ACTGCCCGACATGGCCGACGTGCGTGGCCAGCCACATGCGCGCCGCGCACTGGAGATCGCCGCAGCCGGCTGCCACCACC
TGCTGCTGGTCGGCAGCCCCGGATGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCTGGCCTGCTGCCGGAAGCCAGCGAA
GCCGAAGCCCTGGAAACTGCCGCAATTACCTCCATCAGCGGCCGCGGGCTAGATCTTGCCCGCTGGCGGCAGCGCCCCTA
CCGCGCCCCGCATCACACCGCCAGCGCGGTCGCCCTGGTCGGTGGTGGCACCCATCCGCGTCCCGGCGAGATCTCGCTGG
CCCATCACGGCGTGCTGTTTCTGGATGAACTGCCAGAATGGCAGCGACAAACGCTGGAAGTGCTGCGCGAGCCGTTGGAG
TCGGGTCTGGTCACGATCTCGCGGGCAGCGCGCAGCGTGGATTTCCCGGCACGGTTTCAGCTGGTGGCGGCGATGAACCC
GTGTCCCTGCGGGTGGGCCGGCGATGGCAGCGGGCGTTGCCGCTGCAGCAGCGACAGCATCCGCCGGTATCGCAGCCGCA
TCTCCGGTCCGCTGCTGGACCGCATCGACCTGCATGTCGACGTGCCGCGTCTGCCACCGCAAGCATTGCGGACCGGCAAT
GTGGGCGAGGACAGCGCCAGTGTGCGTGCGCGCGTGGTCGCCGCGCGGCAGCGCCAGCTCGCCCGCGGGCCGCTGCCCAA
TGCGCAGCTCGACCAACCCGACACCGATCGCCATTGCCGGCTGCACAACGACGACCAACTGCTGCTGGAGCGTGCGATCG
AGCATCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCGCGCACCATCGCCGATCTCGACAACAGCGCG
GACATCGCCACGCACCATCTGACCGAAGCAATCGGCTATCGCAAGCTGGATCGCGCACTGACCGCCGCAAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.495

99.012

0.52
  comM Legionella pneumophila strain ERS1305867

52.495

99.012

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.453