Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V4H42_RS08905 Genome accession   NZ_CP144454
Coordinates   1867656..1869185 (-) Length   509 a.a.
NCBI ID   WP_005757692.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM1463     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1862656..1874185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4H42_RS08885 (V4H42_08885) - 1863961..1864644 (-) 684 WP_005718066.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  V4H42_RS08890 (V4H42_08890) envC 1864827..1866056 (+) 1230 WP_010907196.1 murein hydrolase activator EnvC -
  V4H42_RS08895 (V4H42_08895) - 1866053..1866895 (+) 843 WP_115173696.1 divergent polysaccharide deacetylase family protein -
  V4H42_RS08900 (V4H42_08900) - 1866916..1867602 (+) 687 WP_005757690.1 hypothetical protein -
  V4H42_RS08905 (V4H42_08905) comM 1867656..1869185 (-) 1530 WP_005757692.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V4H42_RS08910 (V4H42_08910) yihA 1869293..1869910 (-) 618 WP_115173697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  V4H42_RS08915 (V4H42_08915) - 1870021..1870890 (+) 870 WP_014668443.1 VirK/YbjX family protein -
  V4H42_RS08920 (V4H42_08920) trmL 1870965..1871441 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  V4H42_RS08925 (V4H42_08925) - 1871548..1872489 (-) 942 WP_115173698.1 hypothetical protein -
  V4H42_RS08930 (V4H42_08930) - 1872512..1874032 (-) 1521 WP_046333614.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55962.40 Da        Isoelectric Point: 9.6874

>NTDB_id=933917 V4H42_RS08905 WP_005757692.1 1867656..1869185(-) (comM) [Pasteurella multocida strain PM1463]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=933917 V4H42_RS08905 WP_005757692.1 1867656..1869185(-) (comM) [Pasteurella multocida strain PM1463]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGAACTGCCTACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCCAAACGCGCCTTAACCATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGGCCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCA
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCGGCTTTAGTAGGGGGCGGTACCATACCCAAACCCGGTG
AAATTTCACTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCGGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTCCCCGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACGGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACGGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGATTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGTTGTTACAGAAGTTATC
TGCGATGTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.676

100

0.847
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.116

100

0.66
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47