NTDB

Overview

Name	ciaR	Type	Regulator
Locus tag	ACDW36_RS12675	Genome accession	NZ_CP167984
Coordinates	2653945..2654616 (+)	Length	223 a.a.
NCBI ID	WP_003090494.1	Uniprot ID	A0A0H2ZC88
Organism	Pseudomonas aeruginosa strain 0304d2
Function	repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2648945..2659616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACDW36_RS12640 (ACDW36_12640)	ppyR	2649418..2649675 (+)	258	WP_003090502.1	psl/pyoverdine operon transcriptional regulator PpyR	-
ACDW36_RS12645 (ACDW36_12645)	-	2649662..2650855 (+)	1194	WP_023095463.1	NnrS family protein	-
ACDW36_RS12650 (ACDW36_12650)	-	2650856..2651122 (-)	267	WP_023095464.1	DUF5329 domain-containing protein	-
ACDW36_RS12655 (ACDW36_12655)	-	2651106..2651999 (-)	894	WP_023095465.1	hypothetical protein	-
ACDW36_RS12660 (ACDW36_12660)	-	2652026..2653108 (-)	1083	WP_023095466.1	hypothetical protein	-
ACDW36_RS12665 (ACDW36_12665)	-	2653323..2653631 (+)	309	WP_003090497.1	PepSY domain-containing protein	-
ACDW36_RS12670 (ACDW36_12670)	-	2653631..2653945 (+)	315	WP_003097704.1	PepSY domain-containing protein	-
ACDW36_RS12675 (ACDW36_12675)	ciaR	2653945..2654616 (+)	672	WP_003090494.1	two-component system response regulator CarR	Regulator
ACDW36_RS12680 (ACDW36_12680)	carS	2654613..2655950 (+)	1338	WP_003097701.1	two-component system sensor histidine kinase CarS	-
ACDW36_RS12685 (ACDW36_12685)	-	2656041..2656349 (+)	309	WP_003097699.1	hypothetical protein	-
ACDW36_RS12690 (ACDW36_12690)	-	2656354..2658498 (-)	2145	WP_023095467.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24729.20 Da Isoelectric Point: 5.8445

                                >NTDB_id=933168 ACDW36_RS12675 WP_003090494.1 2653945..2654616(+) (ciaR) [Pseudomonas aeruginosa strain 0304d2]

MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA

RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR

YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide

Download Length: 672 bp

                                >NTDB_id=933168 ACDW36_RS12675 WP_003090494.1 2653945..2654616(+) (ciaR) [Pseudomonas aeruginosa strain 0304d2]

ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT

GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAACCCTACGACCTGATCATCCTCGACCTCGGCC

TGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG

CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA

GCTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC

GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC

TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA

TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG

GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZC88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ciaR	Streptococcus mutans UA159	37.727	98.655	0.372
ciaR	Streptococcus pneumoniae Rx1	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae D39	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae R6	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae TIGR4	37.273	98.655	0.368
micA	Streptococcus pneumoniae Cp1015	35.683	100	0.363
vicR	Streptococcus mutans UA159	35.526	100	0.363

Detailed information NTG0933168