Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MWM02_RS19215 Genome accession   NZ_AP025627
Coordinates   3800515..3801009 (-) Length   164 a.a.
NCBI ID   WP_064552898.1    Uniprot ID   A0A1B7KNX8
Organism   Parageobacillus sp. KH3-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3795515..3806009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM02_RS19195 (PspKH34_37910) rplI 3796695..3797141 (-) 447 WP_064552895.1 50S ribosomal protein L9 -
  MWM02_RS19200 (PspKH34_37920) - 3797138..3799114 (-) 1977 WP_244402705.1 DHH family phosphoesterase -
  MWM02_RS19205 (PspKH34_37930) - 3799198..3800124 (-) 927 WP_244402706.1 YybS family protein -
  MWM02_RS19210 (PspKH34_37940) rpsR 3800221..3800457 (-) 237 WP_013401907.1 30S ribosomal protein S18 -
  MWM02_RS19215 (PspKH34_37950) ssbA 3800515..3801009 (-) 495 WP_064552898.1 single-stranded DNA-binding protein Machinery gene
  MWM02_RS19220 (PspKH34_37960) rpsF 3801038..3801325 (-) 288 WP_064552899.1 30S ribosomal protein S6 -
  MWM02_RS19225 (PspKH34_37970) ychF 3801432..3802532 (-) 1101 WP_064552900.1 redox-regulated ATPase YchF -
  MWM02_RS19230 (PspKH34_37980) - 3802723..3804735 (-) 2013 WP_244402707.1 molybdopterin-dependent oxidoreductase -
  MWM02_RS19235 (PspKH34_37990) - 3804779..3804973 (-) 195 WP_013401910.1 DUF951 domain-containing protein -
  MWM02_RS19240 (PspKH34_38000) - 3804995..3805888 (-) 894 WP_244402708.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18435.31 Da        Isoelectric Point: 4.5870

>NTDB_id=93316 MWM02_RS19215 WP_064552898.1 3800515..3801009(-) (ssbA) [Parageobacillus sp. KH3-4]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSTEQRGMAAGGYYGEPFPFGQNQNHRNTNENDFSRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93316 MWM02_RS19215 WP_064552898.1 3800515..3801009(-) (ssbA) [Parageobacillus sp. KH3-4]
ATGATTAATCGCGTAATTCTTGTGGGAAGGCTAACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
TACGTTTACGCTTGCTGTCAATCGCCCGTTTACAAACCAGCAAGGTGAACGGGAAGCAGATTTTATTAACTGCGTCGTTT
GGCGACGCCAAGCGGAAAATGTCGCGAATTTCTTGAAAAAGGGAAGTTTAGCCGGAGTAGACGGTCGTTTGCAAACCCGC
AGCTATGAAGGTCAAGATGGTAGACGTGTGTATGTGACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAGCCGAAAAG
CAGCACAGAACAGCGCGGCATGGCAGCAGGCGGCTATTATGGGGAGCCATTCCCATTTGGACAAAATCAGAACCATCGCA
ACACAAATGAAAATGATTTTAGTCGCATAGATGAAGATCCTTTTGCAAACGATGGACAACCGATCGATATTTCAGACGAT
GATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B7KNX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.816

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Glaesserella parasuis strain SC1401

34.054

100

0.384
  ssb Vibrio cholerae strain A1552

34.637

100

0.378

Multiple sequence alignment