Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V3434_RS00750 Genome accession   NZ_CP144271
Coordinates   131195..131665 (-) Length   156 a.a.
NCBI ID   WP_024937184.1    Uniprot ID   -
Organism   Staphylococcus aureus strain LA31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 126195..136665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3434_RS00690 (V3434_00690) - 126471..126671 (-) 201 WP_000265041.1 DUF1514 family protein -
  V3434_RS00695 (V3434_00695) - 126671..126820 (-) 150 WP_000595265.1 transcriptional activator RinB -
  V3434_RS00700 (V3434_00700) - 126817..127023 (-) 207 WP_000195820.1 DUF1381 domain-containing protein -
  V3434_RS00705 (V3434_00705) - 127060..127596 (-) 537 WP_001066444.1 dUTPase -
  V3434_RS00710 (V3434_00710) - 127589..127999 (-) 411 WP_000197967.1 hypothetical protein -
  V3434_RS00715 (V3434_00715) - 128176..128505 (-) 330 WP_350948841.1 acetyltransferase -
  V3434_RS00720 (V3434_00720) - 128502..128951 (-) 450 WP_000982711.1 YopX family protein -
  V3434_RS00725 (V3434_00725) - 129016..129258 (-) 243 WP_350948844.1 SAV1978 family virulence-associated passenger protein -
  V3434_RS00730 (V3434_00730) - 129262..129630 (-) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  V3434_RS00735 (V3434_00735) - 129643..130047 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  V3434_RS00740 (V3434_00740) - 130056..130274 (-) 219 WP_000338528.1 hypothetical protein -
  V3434_RS00745 (V3434_00745) - 130281..131165 (-) 885 WP_016047539.1 DnaD domain protein -
  V3434_RS00750 (V3434_00750) ssbA 131195..131665 (-) 471 WP_024937184.1 single-stranded DNA-binding protein Machinery gene
  V3434_RS00755 (V3434_00755) - 131666..132283 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  V3434_RS00760 (V3434_00760) - 132364..133284 (-) 921 WP_000138481.1 recombinase RecT -
  V3434_RS00765 (V3434_00765) - 133286..135229 (-) 1944 WP_000700562.1 AAA family ATPase -
  V3434_RS00770 (V3434_00770) - 135238..135501 (-) 264 WP_001205732.1 hypothetical protein -
  V3434_RS00775 (V3434_00775) - 135510..135770 (-) 261 WP_031824013.1 DUF1108 family protein -
  V3434_RS00780 (V3434_00780) - 135775..136077 (-) 303 WP_000165371.1 DUF2482 family protein -
  V3434_RS00785 (V3434_00785) - 136172..136333 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  V3434_RS00790 (V3434_00790) - 136330..136650 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17673.56 Da        Isoelectric Point: 4.9628

>NTDB_id=933138 V3434_RS00750 WP_024937184.1 131195..131665(-) (ssbA) [Staphylococcus aureus strain LA31]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=933138 V3434_RS00750 WP_024937184.1 131195..131665(-) (ssbA) [Staphylococcus aureus strain LA31]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.497

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372