Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Aeroheme_RS19950 Genome accession   NZ_CP144265
Coordinates   4334286..4335803 (+) Length   505 a.a.
NCBI ID   WP_411166437.1    Uniprot ID   -
Organism   Aeromonas sp. DSM 116730     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4329286..4340803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aeroheme_RS19935 (Aeroheme_03981) - 4331024..4331968 (-) 945 WP_111910834.1 branched-chain amino acid transaminase -
  Aeroheme_RS19940 (Aeroheme_03982) ilvM 4331981..4332259 (-) 279 WP_106885470.1 acetolactate synthase 2 small subunit -
  Aeroheme_RS19945 (Aeroheme_03983) ilvG 4332256..4333902 (-) 1647 WP_411166436.1 acetolactate synthase 2 catalytic subunit -
  Aeroheme_RS19950 (Aeroheme_03984) comM 4334286..4335803 (+) 1518 WP_411166437.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Aeroheme_RS19955 (Aeroheme_03985) - 4335925..4336824 (+) 900 WP_163137468.1 acyltransferase -
  Aeroheme_RS19960 (Aeroheme_03986) - 4336834..4337781 (+) 948 WP_163148350.1 acyltransferase -
  Aeroheme_RS19965 (Aeroheme_03987) - 4337724..4338209 (-) 486 WP_111910829.1 DUF523 domain-containing protein -
  Aeroheme_RS19970 (Aeroheme_03988) - 4338206..4338856 (-) 651 WP_111910828.1 NUDIX hydrolase -
  Aeroheme_RS19975 (Aeroheme_03989) - 4338931..4339566 (+) 636 WP_393935596.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54786.75 Da        Isoelectric Point: 7.7046

>NTDB_id=933086 Aeroheme_RS19950 WP_411166437.1 4334286..4335803(+) (comM) [Aeromonas sp. DSM 116730]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPATYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTHTLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHIIISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLGARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPTI
EKGHLIEALGYRAMDRLLSRLRSGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=933086 Aeroheme_RS19950 WP_411166437.1 4334286..4335803(+) (comM) [Aeromonas sp. DSM 116730]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTCCATTTATCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTCGAGTTCCCCTCCAAGCACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAACATACCTGCTCGATCATGAATTTTT
AGGGGAGCTTGCCTTGACCGGCGAGATCCGTCCCGTGCTCGGGGTACTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGTC
GTACCCTGCTGGTACCGCGAGAGAACGGCCCCGAGGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAGTACGAACTGCCGCTGCCGGAGCCCCAGACCACGCACACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TATTCATAGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCGCCGCTCAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCTGGCCACTGGCATCACAGGCCCTATCG
CACGCCCCACCACAGCGCCTCGGCGGTGGCCCTGGTGGGAGGTGGCAGTCACCCGCGGCCGGGGGAAATATCCCTGGCCC
ACAATGGTGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGTCACATCATCATCAGCCGGGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
TCCCTGCGGCCACTATGGGGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTGCGCTACCTCGGTAAGCTCTCAGGCC
CCTTCCTCGACCGTTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTCACCGGCAAGGCGGAGCGGGGA
GAGTCGAGCCAGCAGATCCGCGACCGGGTGCTAGGGGCGCGGGAGCGAATGCTCAGTCGCAACGGCAAGCTCAACAACCT
GCTTGATAGTCGCGAGATAGAGGATATTTGCCGACTATCGCCACAAGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATTTTGCGGGTGTCGCGCACCATAGCGGATCTGGCGGGGCGCCCCACCATC
GAGAAGGGACATCTTATCGAGGCGCTCGGCTACCGGGCCATGGACAGGCTGCTGTCACGGCTGCGCAGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.406

0.628
  comM Vibrio campbellii strain DS40M4

62.351

99.406

0.62
  comM Haemophilus influenzae Rd KW20

61.66

100

0.618
  comM Glaesserella parasuis strain SC1401

60.355

100

0.606
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.465