Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VX159_RS16230 Genome accession   NZ_CP144212
Coordinates   3533398..3534906 (+) Length   502 a.a.
NCBI ID   WP_371323913.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3528398..3539906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS16200 (VX159_16170) - 3528721..3529176 (-) 456 WP_371323907.1 Crp/Fnr family transcriptional regulator -
  VX159_RS16205 (VX159_16175) - 3529275..3530069 (-) 795 WP_371323908.1 phosphodiesterase -
  VX159_RS16210 (VX159_16180) - 3530181..3531674 (-) 1494 WP_371323909.1 ammonium transporter -
  VX159_RS16215 (VX159_16185) glnK 3531685..3532023 (-) 339 WP_371323910.1 P-II family nitrogen regulator -
  VX159_RS16220 (VX159_16190) - 3532114..3532908 (-) 795 WP_371323911.1 TorF family putative porin -
  VX159_RS16225 (VX159_16195) - 3533133..3533375 (+) 243 WP_371323912.1 accessory factor UbiK family protein -
  VX159_RS16230 (VX159_16200) comM 3533398..3534906 (+) 1509 WP_371323913.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VX159_RS16235 (VX159_16205) - 3534899..3536095 (+) 1197 WP_371323914.1 multidrug effflux MFS transporter -
  VX159_RS16240 (VX159_16210) - 3536317..3536817 (-) 501 WP_371323915.1 GIY-YIG nuclease family protein -
  VX159_RS16245 (VX159_16215) - 3536922..3537473 (-) 552 WP_371323916.1 hypothetical protein -
  VX159_RS16250 (VX159_16220) - 3537572..3538717 (-) 1146 WP_371323917.1 OmpA family protein -
  VX159_RS16255 (VX159_16225) - 3539093..3539485 (-) 393 WP_371323918.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53096.54 Da        Isoelectric Point: 7.9519

>NTDB_id=932626 VX159_RS16230 WP_371323913.1 3533398..3534906(+) (comM) [Dechloromonas sp. ZY10]
MALAIAHSRGLDGLNAPPVRVEVHLASGLPAFALVGLPDTEVKEARDRVRAAIVNSGFEFPQKRITANLAPADLPKESGR
FDLPIALGILAASGQIPAKALADYEFAGELSLSGELRPIRGALAMALQAGDSGKTFILPAASACEAGLTQTAPVLAASSL
LAVCAHLCGRESLSAAASATVDHEISGFSPNTPDLLDVRGQTQARRALEIAAAGQHSLLFSGPPGSGKSMLAARLPGLLP
PLDLAAARESAAVLSLSGQFRPEQFGQRPYRQPHHTASAIALVGGGNPPRPGEISLAHQGILFLDELPEFDRKVLETLRE
PLETGRVHIARAARHAEYPARFQLLAAMNPCPCGYHGHPGRACRCTPDQISRYRARLSGPFLDRIDLLVEVPALLPEELA
SRAPGESSAEVRPRVAAAQARQWQRQGKSNAQLAGQEVDTHCTPDAAGQQLLQQAASRLDLSARAWHRVLRVARTIADLA
ASDTVSSQHIGEAIQLRRLAHA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=932626 VX159_RS16230 WP_371323913.1 3533398..3534906(+) (comM) [Dechloromonas sp. ZY10]
ATGGCCCTCGCCATCGCGCACAGTCGCGGACTCGACGGCCTGAATGCGCCGCCGGTCCGGGTTGAGGTTCATCTGGCCAG
CGGCTTGCCGGCCTTTGCGCTGGTCGGCCTGCCCGATACCGAAGTCAAGGAAGCCCGCGACCGGGTCCGTGCGGCGATCG
TCAATTCCGGATTTGAATTCCCGCAAAAGCGGATTACCGCCAACCTGGCCCCAGCCGATTTACCCAAGGAATCCGGTCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCCAGCGGGCAGATTCCGGCCAAGGCTCTGGCCGACTACGAATTTGC
CGGTGAATTGTCGCTGTCGGGCGAATTGCGCCCGATACGCGGGGCGCTGGCGATGGCCCTGCAGGCCGGCGACTCGGGCA
AGACCTTCATCCTGCCCGCCGCCAGCGCCTGCGAAGCGGGCCTGACGCAGACCGCGCCGGTACTCGCTGCATCCAGCCTG
CTTGCCGTCTGCGCCCATCTCTGCGGGCGCGAAAGCTTGTCGGCAGCGGCCAGCGCCACGGTCGACCACGAAATTTCCGG
TTTTTCCCCGAACACGCCCGATCTGCTCGACGTGCGCGGGCAAACCCAGGCCAGACGCGCGCTCGAAATCGCCGCCGCCG
GCCAGCACTCGCTGCTGTTTTCCGGCCCGCCCGGCTCGGGCAAGTCGATGCTTGCCGCCCGCCTGCCCGGCCTGCTGCCA
CCGCTTGACCTGGCCGCCGCCCGCGAGTCGGCCGCCGTGCTCTCCTTGAGCGGCCAATTCAGGCCCGAGCAATTCGGCCA
GCGCCCTTACCGGCAGCCACATCACACCGCTTCGGCAATTGCCCTGGTCGGCGGCGGCAATCCGCCGCGCCCCGGCGAAA
TCAGCCTGGCGCACCAAGGCATCCTGTTTCTTGATGAATTGCCGGAGTTCGACCGCAAGGTGCTCGAAACCCTGCGCGAA
CCGCTAGAAACCGGGCGCGTGCATATCGCCCGCGCCGCCCGCCACGCCGAATATCCGGCCCGCTTTCAACTGCTGGCGGC
GATGAATCCATGCCCCTGCGGCTATCACGGCCATCCCGGCCGCGCCTGCCGGTGCACGCCGGACCAGATCAGCCGCTACC
GCGCCCGGCTCTCCGGACCCTTCCTCGACCGCATCGACCTGCTGGTTGAGGTCCCGGCGCTCTTGCCCGAGGAACTGGCC
AGCCGCGCTCCCGGCGAAAGCTCGGCCGAAGTCAGGCCGCGTGTTGCCGCCGCCCAGGCCCGCCAATGGCAGCGCCAGGG
CAAAAGCAATGCGCAACTCGCCGGGCAGGAAGTCGATACCCATTGCACGCCGGACGCCGCCGGCCAGCAACTGCTGCAGC
AGGCGGCAAGCCGCCTCGACCTCTCGGCCCGCGCCTGGCACCGCGTACTGCGGGTCGCCCGCACCATCGCCGACCTCGCC
GCCAGCGACACGGTCAGCAGCCAGCATATTGGCGAAGCGATCCAGCTGCGGCGCCTGGCGCATGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.307

99.402

0.53
  comM Vibrio campbellii strain DS40M4

51.503

99.402

0.512
  comM Legionella pneumophila strain ERS1305867

49.32

100

0.506
  comM Legionella pneumophila str. Paris

49.32

100

0.506
  comM Haemophilus influenzae Rd KW20

50.501

99.402

0.502
  comM Glaesserella parasuis strain SC1401

49.307

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.436