Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   VX159_RS00800 Genome accession   NZ_CP144212
Coordinates   154912..155199 (+) Length   95 a.a.
NCBI ID   WP_371324098.1    Uniprot ID   -
Organism   Dechloromonas sp. ZY10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149912..160199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VX159_RS00775 (VX159_00775) - 151032..151592 (+) 561 WP_371324093.1 YqgE/AlgH family protein -
  VX159_RS00780 (VX159_00780) ruvX 151585..152037 (+) 453 WP_371324094.1 Holliday junction resolvase RuvX -
  VX159_RS00785 (VX159_00785) pyrR 152027..152542 (+) 516 WP_371324095.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  VX159_RS00790 (VX159_00790) - 152535..153497 (+) 963 WP_371324096.1 aspartate carbamoyltransferase catalytic subunit -
  VX159_RS00795 (VX159_00795) - 153556..154800 (+) 1245 WP_371324097.1 dihydroorotase -
  VX159_RS00800 (VX159_00800) comE 154912..155199 (+) 288 WP_371324098.1 ComEA family DNA-binding protein Machinery gene
  VX159_RS00805 (VX159_00805) - 155189..156904 (-) 1716 WP_371324099.1 EAL domain-containing protein -
  VX159_RS00810 (VX159_00810) - 157035..157784 (+) 750 WP_371324100.1 hypothetical protein -
  VX159_RS00815 (VX159_00815) - 157907..159919 (-) 2013 WP_371324101.1 acetyl-CoA carboxylase biotin carboxylase subunit -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10136.92 Da        Isoelectric Point: 10.6227

>NTDB_id=932606 VX159_RS00800 WP_371324098.1 154912..155199(+) (comE) [Dechloromonas sp. ZY10]
MKRFIALLIAGLASIQFAYAAVNLNTASQAELETVKGIGPAKAKAIIEHRSKNGPFKSVDDLKEIKGFGDKVVNKMRPEL
TVAGTAEKAATPLKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=932606 VX159_RS00800 WP_371324098.1 154912..155199(+) (comE) [Dechloromonas sp. ZY10]
ATGAAGCGCTTCATTGCCCTGCTCATTGCTGGCCTCGCCAGCATCCAGTTCGCTTACGCCGCCGTTAACCTGAATACCGC
CAGCCAGGCCGAGCTGGAAACGGTCAAGGGTATCGGTCCGGCCAAGGCCAAGGCGATCATCGAGCATCGCAGCAAGAACG
GGCCATTCAAGTCGGTTGACGATCTCAAGGAGATCAAGGGCTTTGGCGACAAGGTGGTGAACAAGATGCGCCCCGAACTG
ACTGTTGCCGGGACGGCCGAAAAGGCTGCTACGCCGCTTAAAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

52.273

92.632

0.484
  comE Neisseria gonorrhoeae MS11

52.273

92.632

0.484
  comE Neisseria gonorrhoeae MS11

52.273

92.632

0.484
  comE Neisseria gonorrhoeae MS11

52.273

92.632

0.484
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

86.316

0.411
  comEA/celA/cilE Streptococcus mitis NCTC 12261

48.611

75.789

0.368
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.945

76.842

0.368