Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VWP12_RS02570 Genome accession   NZ_CP144142
Coordinates   532718..534226 (+) Length   502 a.a.
NCBI ID   WP_410474472.1    Uniprot ID   -
Organism   Guyparkeria sp. TX1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527718..539226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWP12_RS02540 (VWP12_02540) - 527892..528446 (+) 555 WP_410474467.1 DJ-1 family glyoxalase III -
  VWP12_RS02545 (VWP12_02545) - 528790..529419 (+) 630 WP_410474468.1 YigZ family protein -
  VWP12_RS02550 (VWP12_02550) - 529525..530769 (-) 1245 WP_410474469.1 ammonium transporter -
  VWP12_RS02555 (VWP12_02555) - 530785..531123 (-) 339 WP_125199395.1 P-II family nitrogen regulator -
  VWP12_RS02560 (VWP12_02560) - 531188..531919 (-) 732 WP_410474470.1 TorF family putative porin -
  VWP12_RS02565 (VWP12_02565) - 532270..532551 (+) 282 WP_410474471.1 accessory factor UbiK family protein -
  VWP12_RS02570 (VWP12_02570) comM 532718..534226 (+) 1509 WP_410474472.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VWP12_RS02575 (VWP12_02575) cmoB 534229..535227 (-) 999 WP_410474473.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  VWP12_RS02580 (VWP12_02580) - 535235..536266 (-) 1032 WP_410474474.1 DUF2860 family protein -
  VWP12_RS02585 (VWP12_02585) cmoA 536378..537178 (-) 801 WP_410474475.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  VWP12_RS02590 (VWP12_02590) mnmH 537270..538409 (-) 1140 WP_410474476.1 tRNA 2-selenouridine(34) synthase MnmH -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53588.27 Da        Isoelectric Point: 7.5122

>NTDB_id=932497 VWP12_RS02570 WP_410474472.1 532718..534226(+) (comM) [Guyparkeria sp. TX1]
MPIAKIHSRALLGIHAPAVTVEAHVAPGLPAFTLVGLPETAVRESRDRVRAAILSSGFEFPPRRLTVNLAPADLPKESAR
FDLAIALAILAATGQLPAPARERLAHIECLGELSLDGSLRSVRGNLSAARAARDAGRELLLPADGQAEAELIPGVAGRGL
HHLRDLVAYLAGEADPVRLEHRPPPPVDPAINGDLADVRGQPRAKRALAIAAAGKHNLLLIGPPGAGKSMLAQRLAGILP
PMTEEEALAAAEVATVTPGGFDPTRFGERPFRAPHHSASAVALIGGGSHPAPGEISLAHHGTLFLDELPEFDRRVLEALR
EPLEAGSVMISRAARHARFPADFQLIAAMNPSPQGSEIHSRAAQRYRAKVSGPLLDRIDIHLEVPRVPATDLDQAQPDGE
DSQTVRERVIAARQRMRARQGVVNARLDAAGVAEHIVLAQPERHMLNRAIEQLNLSGRARERILKLARSIADYEDRDAID
SAALAEAIGYRNLDRLFSGGMS

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=932497 VWP12_RS02570 WP_410474472.1 532718..534226(+) (comM) [Guyparkeria sp. TX1]
ATGCCCATCGCCAAGATTCACAGCCGGGCCCTGCTCGGCATTCACGCCCCCGCGGTCACCGTCGAGGCCCATGTCGCCCC
GGGACTGCCGGCATTCACCCTGGTCGGGCTACCCGAGACCGCCGTGCGCGAATCCCGCGACCGGGTCCGTGCGGCGATCC
TTTCCTCGGGCTTCGAGTTCCCGCCACGTCGGCTGACCGTCAATCTCGCCCCGGCCGACCTGCCCAAGGAAAGCGCGCGC
TTCGATCTCGCCATCGCCCTGGCCATCCTCGCCGCCACCGGTCAGCTACCGGCGCCCGCCCGTGAACGATTGGCACATAT
CGAATGCCTGGGTGAGCTGTCCCTGGATGGCAGCTTGCGCTCGGTGCGCGGCAATCTGTCCGCCGCCCGGGCGGCGCGCG
ATGCCGGGCGGGAATTGCTCCTGCCAGCCGACGGCCAGGCGGAGGCGGAGCTCATCCCGGGGGTTGCCGGCCGAGGGCTA
CATCATCTGCGCGATCTGGTGGCCTACCTGGCGGGCGAGGCCGATCCCGTGCGACTGGAACACCGTCCACCCCCGCCGGT
CGACCCGGCCATCAATGGCGATCTCGCCGACGTCCGCGGCCAACCGCGGGCCAAGCGCGCGCTGGCGATCGCCGCGGCTG
GAAAACACAATCTGCTGCTGATCGGTCCACCGGGTGCCGGCAAGAGCATGCTGGCCCAGCGACTCGCCGGCATCCTGCCG
CCGATGACCGAGGAAGAGGCGCTGGCCGCCGCCGAGGTGGCCACGGTCACGCCCGGTGGTTTCGACCCCACTCGCTTCGG
TGAGCGCCCATTTCGCGCCCCGCACCACTCCGCCTCGGCCGTCGCGCTGATCGGTGGCGGCTCTCACCCGGCACCGGGCG
AGATCTCGCTCGCCCACCACGGCACGCTGTTCCTCGACGAGCTGCCGGAATTCGATCGCCGCGTGCTCGAGGCCCTGCGC
GAACCACTCGAGGCCGGTTCGGTGATGATCTCGCGGGCCGCGCGCCACGCCCGCTTCCCGGCCGACTTTCAGCTGATCGC
GGCGATGAACCCTTCACCGCAGGGCAGCGAGATCCACTCGCGCGCCGCCCAGCGTTACCGCGCCAAGGTCTCCGGCCCAT
TGCTCGATCGGATCGACATCCACCTGGAAGTCCCGCGCGTGCCGGCCACCGACCTCGATCAGGCTCAGCCCGACGGCGAG
GACAGCCAGACCGTGCGCGAGCGGGTGATCGCGGCACGTCAACGCATGCGGGCACGGCAGGGGGTGGTCAACGCGCGGCT
GGACGCCGCCGGGGTGGCCGAACACATCGTGCTGGCGCAACCCGAGCGCCACATGCTCAACCGGGCGATCGAGCAACTGA
ATCTCTCGGGGCGGGCGCGCGAGCGGATCCTCAAGCTCGCCCGCAGCATCGCCGACTACGAGGATCGCGACGCCATCGAT
TCGGCCGCCCTGGCCGAGGCGATCGGCTACCGCAACCTCGATCGGCTGTTCAGCGGGGGAATGTCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.099

100

0.502
  comM Vibrio cholerae strain A1552

50.099

100

0.502
  comM Glaesserella parasuis strain SC1401

47.535

100

0.48
  comM Haemophilus influenzae Rd KW20

47.628

100

0.48
  comM Legionella pneumophila str. Paris

44.334

100

0.444
  comM Legionella pneumophila strain ERS1305867

44.334

100

0.444
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.08

100

0.44