Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V3D52_RS27130 Genome accession   NZ_CP144123
Coordinates   6116419..6117909 (+) Length   496 a.a.
NCBI ID   WP_338745593.1    Uniprot ID   -
Organism   Pseudomonas putida strain WBB028     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6111419..6122909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3D52_RS27105 (V3D52_27105) glnK 6112350..6112688 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  V3D52_RS27110 (V3D52_27110) - 6113050..6113316 (+) 267 WP_258654351.1 accessory factor UbiK family protein -
  V3D52_RS27115 (V3D52_27115) - 6113317..6113670 (+) 354 WP_258910669.1 gamma-glutamylcyclotransferase family protein -
  V3D52_RS27120 (V3D52_27120) - 6113708..6114136 (+) 429 WP_338745591.1 TOBE domain-containing protein -
  V3D52_RS27125 (V3D52_27125) - 6114142..6116160 (-) 2019 WP_338745592.1 DUF4034 domain-containing protein -
  V3D52_RS27130 (V3D52_27130) comM 6116419..6117909 (+) 1491 WP_338745593.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V3D52_RS27135 (V3D52_27135) - 6118042..6118470 (-) 429 WP_338745594.1 DoxX family protein -
  V3D52_RS27140 (V3D52_27140) - 6118673..6119041 (-) 369 WP_338745595.1 response regulator -
  V3D52_RS27145 (V3D52_27145) - 6119038..6120030 (-) 993 WP_338745596.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52936.68 Da        Isoelectric Point: 7.7103

>NTDB_id=932410 V3D52_RS27130 WP_338745593.1 6116419..6117909(+) (comM) [Pseudomonas putida strain WBB028]
MSLAIVHSRAQVGVQAPSVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPAASLAEVECLGELALSGKLRAVQGVLPAALAAREAGRSLVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILHQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAARVAQAREVQQRRQGCVNAFLDLEGLRRHCGLQAVDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=932410 V3D52_RS27130 WP_338745593.1 6116419..6117909(+) (comM) [Pseudomonas putida strain WBB028]
ATGTCCCTAGCCATCGTCCACAGCCGCGCCCAGGTGGGTGTGCAGGCACCCTCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCTCATCTCACCCTGGTTGGCCTGCCAGAAACCACAGTCAAGGAAAGCAAGGACCGTGTACGCAGTGCCATCG
TCAACTCCGGGCTGAACTATCCGCAGCGGCGCATAACCCAGAACCTGGCCCCCGCCGACTTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATCCTGGCCGCCGACGGCCAGGTGCCAGCGGCCAGCCTTGCAGAGGTTGAGTGCCT
GGGCGAACTGGCGTTGTCTGGCAAATTGCGTGCAGTGCAAGGCGTGCTGCCGGCGGCCCTGGCGGCTCGCGAGGCGGGCC
GCTCGCTGGTAGTTCCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCGGCGGGCTGGTGGTGTATGCGGTGGGCCACCTG
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTACCGCTGCCGCCTTACGCGGCCAACGGTTTGATCCTGCATCAACGTCC
CTACCCCGACCTGAGCGAGGTACAGGGCCAGCTGGCGGCCAAGCGCGCGTTGATGCTGGCGGCGGCTGGGGCGCACAACC
TGTTGTTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCGCTTGAGGTGGCGGCCATCCAGTCGGTCAGCGGGCATACACCGCTGAGCAGCTGGCCGCAGCGACCGTTTCG
CCACCCTCACCACTCCGCATCCGGCCCGGCACTGGTCGGTGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCAGAGTTCGAGCGGCGCGTGCTGGAGGTACTGCGCGAGCCGCTGGAATCG
GGCGAAATCGTGATTGCCCGCGCCCGCGACAAGGTGCGCTTTCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCGTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGGTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGTTGT
CCGGGCCGCTGCTGGACCGCATCGACCTGCACCTCACCGTGGCCCGCGAAAGCACCACGCTGAACAACCAGCCCTGTGGT
GAAGCCAGTGCCGATGTGGCCGCCAGGGTGGCGCAGGCGCGGGAGGTACAGCAGCGCCGCCAAGGGTGTGTGAATGCGTT
TCTCGACCTTGAAGGGTTGCGGCGCCATTGCGGACTGCAAGCGGTGGACCAGGCGTGGCTGGAGGGGGCCTGCGAGCGGT
TGACCTTGTCGCTGCGGGCGGCGCACCGGTTATTGAAAGTGGCACGAACACTGGCGGACCTGGAGGGGTGCGAGGCGATT
GGCCGGCCGCACCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.827

100

0.571
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio cholerae strain A1552

55.556

99.798

0.554
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

48.992

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.478