Detailed information NTG0932248

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: VXF94_RS21565
• Genome accession: NZ_CP143956
• Coordinates: 2675039..2675728 (+)
• Length: 229 a.a.
• NCBI ID: WP_198315882.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2670039..2680728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS13580 (VXF94_13580)	degS	2670324..2671487 (+)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator
VXF94_RS13585 (VXF94_13585)	degU	2671564..2672253 (+)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
VXF94_RS13590 (VXF94_13590)	-	2672350..2673198 (+)	849	WP_013353786.1	DegV family protein	-
VXF94_RS13595 (VXF94_13595)	comFA	2673305..2674690 (+)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
VXF94_RS13600 (VXF94_13600)	-	2674749..2675033 (+)	285	WP_013353784.1	late competence development ComFB family protein	-
VXF94_RS21565	comFC	2675039..2675728 (+)	690	WP_198315882.1	ComF family protein	Machinery gene
VXF94_RS13615 (VXF94_13615)	-	2675802..2676221 (+)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
VXF94_RS13620 (VXF94_13620)	flgM	2676291..2676557 (+)	267	WP_013353781.1	flagellar biosynthesis anti-sigma factor FlgM	-
VXF94_RS13625 (VXF94_13625)	-	2676572..2677054 (+)	483	WP_013353780.1	flagellar protein FlgN	-
VXF94_RS13630 (VXF94_13630)	flgK	2677070..2678587 (+)	1518	WP_014471092.1	flagellar hook-associated protein FlgK	-
VXF94_RS13635 (VXF94_13635)	flgL	2678599..2679516 (+)	918	WP_013353778.1	flagellar hook-associated protein FlgL	-
VXF94_RS13640 (VXF94_13640)	-	2679608..2680177 (+)	570	WP_014471091.1	DUF6470 family protein	-
VXF94_RS13645 (VXF94_13645)	fliW	2680207..2680638 (+)	432	WP_007407475.1	flagellar assembly protein FliW	-

Sequence

Protein

• Length: 229 a.a.
• Molecular weight: 25295.06 Da
• Isoelectric Point: 8.6865

>NTDB_id=932248 VXF94_RS21565 WP_198315882.1 2675039..2675728(+) (comFC) [Bacillus amyloliquefaciens strain Fad 108]
MNCLLCDSPISRSLTWSSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNKKCADCMARESKTEQRFLLRQNRSVF
LYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide

• Length: 690 bp

>NTDB_id=932248 VXF94_RS21565 WP_198315882.1 2675039..2675728(+) (comFC) [Bacillus amyloliquefaciens strain Fad 108]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGATCACTGACTTGGAGTTCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATCGAAGGCCCCGTGTGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACAAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTT
TTGTATAATGATGCAATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGAGCGCGGATTTAATCAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGA
CAGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (171-227)

• Double zinc ribbon domain (DZR_2) (2-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	59.471	99.127	0.59
comFC/cflB	Streptococcus mitis NCTC 12261	36.245	100	0.362
comFC/cflB	Streptococcus pneumoniae Rx1	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae D39	35.931	100	0.362
comFC/cflB	Streptococcus pneumoniae R6	35.931	100	0.362