Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VXF94_RS13595 Genome accession   NZ_CP143956
Coordinates   2673305..2674690 (+) Length   461 a.a.
NCBI ID   WP_013353785.1    Uniprot ID   A0A9P1NJB2
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2668305..2679690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS13575 (VXF94_13575) - 2669454..2670101 (-) 648 WP_013353788.1 YigZ family protein -
  VXF94_RS13580 (VXF94_13580) degS 2670324..2671487 (+) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  VXF94_RS13585 (VXF94_13585) degU 2671564..2672253 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VXF94_RS13590 (VXF94_13590) - 2672350..2673198 (+) 849 WP_013353786.1 DegV family protein -
  VXF94_RS13595 (VXF94_13595) comFA 2673305..2674690 (+) 1386 WP_013353785.1 DEAD/DEAH box helicase Machinery gene
  VXF94_RS13600 (VXF94_13600) - 2674749..2675033 (+) 285 WP_013353784.1 late competence development ComFB family protein -
  VXF94_RS21565 comFC 2675039..2675728 (+) 690 WP_198315882.1 ComF family protein Machinery gene
  VXF94_RS13615 (VXF94_13615) - 2675802..2676221 (+) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  VXF94_RS13620 (VXF94_13620) flgM 2676291..2676557 (+) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  VXF94_RS13625 (VXF94_13625) - 2676572..2677054 (+) 483 WP_013353780.1 flagellar protein FlgN -
  VXF94_RS13630 (VXF94_13630) flgK 2677070..2678587 (+) 1518 WP_014471092.1 flagellar hook-associated protein FlgK -
  VXF94_RS13635 (VXF94_13635) flgL 2678599..2679516 (+) 918 WP_013353778.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52689.28 Da        Isoelectric Point: 10.2042

>NTDB_id=932220 VXF94_RS13595 WP_013353785.1 2673305..2674690(+) (comFA) [Bacillus amyloliquefaciens strain Fad 108]
MSGGASEFSKVRDFFYGRHLLRSEIPFSDQCIKRFIEKEYITAEPSVIRRKNRYVCRRCGQSDQARFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNLAAENSWEPIKLSWEGTLTDGQKQAAEALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRFDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=932220 VXF94_RS13595 WP_013353785.1 2673305..2674690(+) (comFA) [Bacillus amyloliquefaciens strain Fad 108]
ATGTCCGGAGGTGCTTCAGAATTTTCGAAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGTCTGACCAAGCCCGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCTAGCGGCTGAAAACAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCGGAAGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGTGAGGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCT
GATGAGACATTAAGATTTGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAGG
GACGGTTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCTAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625