Detailed information NTG0932218

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: VXF94_RS13580
• Genome accession: NZ_CP143956
• Coordinates: 2670324..2671487 (+)
• Length: 387 a.a.
• NCBI ID: WP_013353787.1
• Uniprot ID: A0A9P1JKJ4
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2665324..2676487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS13560 (VXF94_13560)	tuaH	2665670..2666866 (+)	1197	WP_013353791.1	teichuronic acid biosynthesis protein TuaH	-
VXF94_RS13565 (VXF94_13565)	-	2666999..2668075 (+)	1077	WP_013353790.1	glycosyltransferase family 4 protein	-
VXF94_RS13570 (VXF94_13570)	-	2668175..2669449 (-)	1275	WP_013353789.1	LCP family protein	-
VXF94_RS13575 (VXF94_13575)	-	2669454..2670101 (-)	648	WP_013353788.1	YigZ family protein	-
VXF94_RS13580 (VXF94_13580)	degS	2670324..2671487 (+)	1164	WP_013353787.1	two-component sensor histidine kinase DegS	Regulator
VXF94_RS13585 (VXF94_13585)	degU	2671564..2672253 (+)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
VXF94_RS13590 (VXF94_13590)	-	2672350..2673198 (+)	849	WP_013353786.1	DegV family protein	-
VXF94_RS13595 (VXF94_13595)	comFA	2673305..2674690 (+)	1386	WP_013353785.1	DEAD/DEAH box helicase	Machinery gene
VXF94_RS13600 (VXF94_13600)	-	2674749..2675033 (+)	285	WP_013353784.1	late competence development ComFB family protein	-
VXF94_RS21565	comFC	2675039..2675728 (+)	690	WP_198315882.1	ComF family protein	Machinery gene
VXF94_RS13615 (VXF94_13615)	-	2675802..2676221 (+)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45028.85 Da
• Isoelectric Point: 7.1379

>NTDB_id=932218 VXF94_RS13580 WP_013353787.1 2670324..2671487(+) (degS) [Bacillus amyloliquefaciens strain Fad 108]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=932218 VXF94_RS13580 WP_013353787.1 2670324..2671487(+) (degS) [Bacillus amyloliquefaciens strain Fad 108]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948