Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JPge_RS19275 Genome accession   NZ_AP025624
Coordinates   3832527..3833021 (-) Length   164 a.a.
NCBI ID   WP_017435781.1    Uniprot ID   A0A023DB50
Organism   Saccharococcus caldoxylosilyticus strain KH1-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3827527..3838021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JPge_RS19255 (PcaKH16_37720) rplI 3828760..3829209 (-) 450 WP_017435784.1 50S ribosomal protein L9 -
  JPge_RS19260 (PcaKH16_37730) - 3829206..3831182 (-) 1977 WP_017435783.1 DHH family phosphoesterase -
  JPge_RS19265 (PcaKH16_37740) - 3831229..3832155 (-) 927 WP_017435782.1 YybS family protein -
  JPge_RS19270 (PcaKH16_37750) rpsR 3832234..3832470 (-) 237 WP_013401907.1 30S ribosomal protein S18 -
  JPge_RS19275 (PcaKH16_37760) ssbA 3832527..3833021 (-) 495 WP_017435781.1 single-stranded DNA-binding protein Machinery gene
  JPge_RS19280 (PcaKH16_37770) rpsF 3833051..3833338 (-) 288 WP_017435780.1 30S ribosomal protein S6 -
  JPge_RS19285 (PcaKH16_37780) ychF 3833447..3834547 (-) 1101 WP_017435779.1 redox-regulated ATPase YchF -
  JPge_RS19290 (PcaKH16_37790) - 3834626..3836638 (-) 2013 WP_081161466.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18427.32 Da        Isoelectric Point: 4.6052

>NTDB_id=93220 JPge_RS19275 WP_017435781.1 3832527..3833021(-) (ssbA) [Saccharococcus caldoxylosilyticus strain KH1-6]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYEGQDGRRVYVTEVVADSVQFLEPKSSTEQRGTATGGYFGEPFPFGPDQNHRNPNERDFSRIDEDPFANDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=93220 JPge_RS19275 WP_017435781.1 3832527..3833021(-) (ssbA) [Saccharococcus caldoxylosilyticus strain KH1-6]
ATGATTAACCGCGTAATTCTCGTTGGGAGATTAACGAGAGATCCGGAATTACGCTATACTCCAAGTGGGGTGGCTGTTGC
TACGTTTACGCTTGCTGTCAATCGCCCGTTTACCAATCAGCAAGGCGAACGGGAAGCAGATTTTATTAACTGTGTCGTTT
GGCGACGTCAAGCGGAGAATGTTGCGAATTTCTTAAAAAAAGGAAGTTTAGCCGGAGTCGATGGCCGTTTACAGACCCGC
AGCTATGAAGGTCAAGACGGAAGACGTGTATATGTAACGGAAGTGGTTGCTGATAGCGTCCAATTTCTTGAACCGAAAAG
TAGCACTGAACAGCGTGGGACGGCAACAGGCGGCTACTTTGGGGAGCCATTCCCATTTGGACCAGATCAGAACCATCGCA
ATCCGAATGAAAGAGATTTTAGTCGCATAGATGAAGATCCTTTTGCCAACGACGGTCAACCGATCGATATTTCGGATGAT
GATTTGCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A023DB50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Glaesserella parasuis strain SC1401

34.254

100

0.378
  ssb Vibrio cholerae strain A1552

33.708

100

0.366

Multiple sequence alignment