Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   U6C02_RS03270 Genome accession   NZ_CP143843
Coordinates   613902..614855 (-) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608902..619855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS03250 (U6C02_03250) - 609781..611205 (+) 1425 WP_015388705.1 MDR family MFS transporter -
  U6C02_RS03255 (U6C02_03255) - 611247..612191 (-) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  U6C02_RS03260 (U6C02_03260) - 612213..612971 (-) 759 WP_022552588.1 ABC transporter ATP-binding protein -
  U6C02_RS03265 (U6C02_03265) - 612965..613912 (-) 948 WP_069448545.1 iron chelate uptake ABC transporter family permease subunit -
  U6C02_RS03270 (U6C02_03270) ceuB 613902..614855 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  U6C02_RS03275 (U6C02_03275) - 615270..616634 (+) 1365 WP_003156333.1 aspartate kinase -
  U6C02_RS03280 (U6C02_03280) - 616714..616824 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  U6C02_RS03285 (U6C02_03285) phrC 616974..617093 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  U6C02_RS03290 (U6C02_03290) rapC 617077..618225 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  U6C02_RS03295 (U6C02_03295) - 618378..619811 (-) 1434 WP_162130794.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=931483 U6C02_RS03270 WP_003156332.1 613902..614855(-) (ceuB) [Bacillus velezensis strain YM-3]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=931483 U6C02_RS03270 WP_003156332.1 613902..614855(-) (ceuB) [Bacillus velezensis strain YM-3]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533