Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1599_RS04295 Genome accession   NZ_CP143776
Coordinates   901871..902401 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter sp. ECC-175     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 896871..907401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1599_RS04275 (V1599_04275) aphA 897199..897912 (+) 714 WP_112012137.1 acid phosphatase AphA -
  V1599_RS04280 (V1599_04280) - 898026..898442 (+) 417 WP_297122552.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1599_RS04285 (V1599_04285) - 898445..898798 (+) 354 WP_112012139.1 MmcQ/YjbR family DNA-binding protein -
  V1599_RS04290 (V1599_04290) uvrA 898799..901624 (-) 2826 WP_395301066.1 excinuclease ABC subunit UvrA -
  V1599_RS04295 (V1599_04295) ssb 901871..902401 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1599_RS04300 (V1599_04300) - 902447..903973 (-) 1527 WP_395301067.1 EAL domain-containing protein -
  V1599_RS04305 (V1599_04305) - 903983..904747 (-) 765 WP_112012143.1 EAL domain-containing protein -
  V1599_RS04310 (V1599_04310) - 904821..906326 (-) 1506 WP_146745782.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=931349 V1599_RS04295 WP_006810470.1 901871..902401(+) (ssb) [Enterobacter sp. ECC-175]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=931349 V1599_RS04295 WP_006810470.1 901871..902401(+) (ssb) [Enterobacter sp. ECC-175]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAGCTGGCGGAAGTTGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGTGCACCGGCAGGCGGCGGCCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCCGCTCCG
GCACCGTCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369