Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1578_RS04610 Genome accession   NZ_CP143771
Coordinates   961507..962031 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae strain ECC-003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 956507..967031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1578_RS04590 (V1578_04585) aphA 956831..957544 (+) 714 WP_194501196.1 acid phosphatase AphA -
  V1578_RS04595 (V1578_04590) - 957657..958073 (+) 417 WP_013095067.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1578_RS04600 (V1578_04595) - 958076..958429 (+) 354 WP_013095068.1 MmcQ/YjbR family DNA-binding protein -
  V1578_RS04605 (V1578_04600) uvrA 958433..961255 (-) 2823 WP_013095069.1 excinuclease ABC subunit UvrA -
  V1578_RS04610 (V1578_04605) ssb 961507..962031 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1578_RS04615 (V1578_04610) - 962093..962374 (-) 282 WP_008503385.1 YjcB family protein -
  V1578_RS04620 (V1578_04615) - 962932..964497 (+) 1566 WP_023622182.1 EAL domain-containing protein -
  V1578_RS04625 (V1578_04620) soxS 964504..964830 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  V1578_RS04630 (V1578_04625) soxR 964928..965386 (+) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -
  V1578_RS04635 (V1578_04630) - 965699..966370 (+) 672 WP_013095073.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=931327 V1578_RS04610 WP_003860284.1 961507..962031(+) (ssb) [Enterobacter cloacae strain ECC-003]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=931327 V1578_RS04610 WP_003860284.1 961507..962031(+) (ssb) [Enterobacter cloacae strain ECC-003]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCAACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAGTACACCACTGAAGTGGTGGTAAACGTTGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCACCGGCACCG
TCTAATGAACCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374