Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1578_RS02240 Genome accession   NZ_CP143771
Coordinates   453571..455091 (+) Length   506 a.a.
NCBI ID   WP_130627092.1    Uniprot ID   -
Organism   Enterobacter cloacae strain ECC-003     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 448571..460091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1578_RS02215 (V1578_02215) ilvE 450136..451065 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  V1578_RS02220 (V1578_02220) ilvM 451084..451347 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  V1578_RS02225 (V1578_02225) ilvG 451344..452990 (-) 1647 WP_023620832.1 acetolactate synthase 2 catalytic subunit -
  V1578_RS02230 (V1578_02230) ilvX 452993..453043 (-) 51 WP_102046757.1 peptide IlvX -
  V1578_RS02235 (V1578_02235) ilvL 453130..453228 (-) 99 WP_023620831.1 ilv operon leader peptide -
  V1578_RS02240 (V1578_02240) comM 453571..455091 (+) 1521 WP_130627092.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1578_RS02245 (V1578_02245) - 455124..455462 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  V1578_RS02250 (V1578_02250) hdfR 455581..456402 (+) 822 WP_308926156.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55010.99 Da        Isoelectric Point: 7.2668

>NTDB_id=931322 V1578_RS02240 WP_130627092.1 453571..455091(+) (comM) [Enterobacter cloacae strain ECC-003]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGRHTLSEPKETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTAQVRERVITSQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGEPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=931322 V1578_RS02240 WP_130627092.1 453571..455091(+) (comM) [Enterobacter cloacae strain ECC-003]
ATGTCACTATCAGTTGTTTACACGCGCGCGGCGATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCCTGCCAGAAACCACTGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTTCCCGCAAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACAGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGGTGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCGACATACGCTCTCCGAGCCAAAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAATGGGTTATTGCCGCCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTCAGTCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGCGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCTGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCGCCCCCTGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGCAGGTTCGCGAACGGGTTATCACCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTAAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACCATTGCCGATGTGGAAGGAGAGCCAGAAATT
GAAAGACACCATCTTCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.18

100

0.599
  comM Glaesserella parasuis strain SC1401

59.566

100

0.597
  comM Vibrio cholerae strain A1552

59.96

99.209

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

100

0.439