Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1579_RS04395 Genome accession   NZ_CP143766
Coordinates   915036..915566 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter mori strain ECC-007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 910036..920566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1579_RS04375 (V1579_04365) aphA 910360..911073 (+) 714 WP_109492557.1 acid phosphatase AphA -
  V1579_RS04380 (V1579_04370) - 911187..911603 (+) 417 WP_395302364.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1579_RS04385 (V1579_04375) - 911606..911959 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  V1579_RS04390 (V1579_04380) uvrA 911963..914785 (-) 2823 WP_395302365.1 excinuclease ABC subunit UvrA -
  V1579_RS04395 (V1579_04385) ssb 915036..915566 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1579_RS04400 (V1579_04390) - 915627..915908 (-) 282 WP_003860282.1 YjcB family protein -
  V1579_RS04405 (V1579_04395) - 916557..918122 (+) 1566 WP_100167220.1 EAL domain-containing protein -
  V1579_RS04410 (V1579_04400) soxS 918129..918455 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  V1579_RS04415 (V1579_04405) soxR 918554..919012 (+) 459 WP_089598624.1 redox-sensitive transcriptional activator SoxR -
  V1579_RS04420 (V1579_04410) - 919380..920051 (+) 672 WP_109492559.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=931283 V1579_RS04395 WP_006177466.1 915036..915566(+) (ssb) [Enterobacter mori strain ECC-007]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=931283 V1579_RS04395 WP_006177466.1 915036..915566(+) (ssb) [Enterobacter mori strain ECC-007]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCCCCGTCTAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364