Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1579_RS02215 Genome accession   NZ_CP143766
Coordinates   452725..454245 (+) Length   506 a.a.
NCBI ID   WP_395302291.1    Uniprot ID   -
Organism   Enterobacter mori strain ECC-007     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447725..459245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1579_RS02190 (V1579_02185) ilvE 449290..450219 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  V1579_RS02195 (V1579_02190) ilvM 450238..450501 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  V1579_RS02200 (V1579_02195) ilvG 450498..452144 (-) 1647 WP_042719101.1 acetolactate synthase 2 catalytic subunit -
  V1579_RS02205 ilvX 452147..452197 (-) 51 WP_201405605.1 peptide IlvX -
  V1579_RS02210 (V1579_02200) ilvL 452284..452382 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1579_RS02215 (V1579_02205) comM 452725..454245 (+) 1521 WP_395302291.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1579_RS02220 (V1579_02210) - 454275..454613 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  V1579_RS02225 (V1579_02215) hdfR 454732..455553 (+) 822 WP_042719103.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55035.96 Da        Isoelectric Point: 6.8206

>NTDB_id=931277 V1579_RS02215 WP_395302291.1 452725..454245(+) (comM) [Enterobacter mori strain ECC-007]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDEVTDVPDDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTALQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARLQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGMLRQTGIQS
ESSANVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAEWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=931277 V1579_RS02215 WP_395302291.1 452725..454245(+) (comM) [Enterobacter mori strain ECC-007]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCGGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCGAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCCTCTGAGCAGCTTAATACAACCAGGCTAGGTTCGTACGAGTTCGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCCATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAGGTGAGTCTTATTGCAGAAAAGGGATGCCTTATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAGCTGTCCGAACCGGAGGAGTGTGACGATGAGGTAACGGATGTACC
AGATGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCAGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAGACCATGCTGGCGAGCAGGCTGAGTGGGTTGCTCCCACCGCTTAATAATCAT
GAAGCGCTGGAGAGCGCCGCGATATATAGCCTGATCGGTTCTACGGCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCGCTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGGGAACCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGTGCCAAAATAAGCTATCCCGCCAGGCTCCAGCTCGTCGCGGCGATGAACCCCAG
CCCCACGGGACACTATCAGGGGAATCATAACCGCTGCACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCCGGCC
CGTTTCTCGATCGTTTCGATTTATCACTGGAAATCCCGCTTCCGCCGCCTGGCATGCTCAGGCAGACGGGTATACAGAGT
GAAAGCTCTGCGAATGTTCGCGAGCGGGTTATCGCGGCGCAGGCGAGACAGTATGCTCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCACTTAACGGTGAGGATGCGGAGTGGCTGGAAGAGACGTTGACGCGGT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATCGACCGTTTACTACTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Glaesserella parasuis strain SC1401

57.594

100

0.577
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441