Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V1589_RS04705 | Genome accession | NZ_CP143748 |
| Coordinates | 975577..976104 (+) | Length | 175 a.a. |
| NCBI ID | WP_020882840.1 | Uniprot ID | A0A839BRA2 |
| Organism | Enterobacter ludwigii strain ECC-051 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 970577..981104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V1589_RS04685 (V1589_04680) | aphA | 970900..971613 (+) | 714 | WP_014168217.1 | acid phosphatase AphA | - |
| V1589_RS04690 (V1589_04685) | - | 971727..972143 (+) | 417 | WP_014168218.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| V1589_RS04695 (V1589_04690) | - | 972146..972499 (+) | 354 | WP_014168219.1 | MmcQ/YjbR family DNA-binding protein | - |
| V1589_RS04700 (V1589_04695) | uvrA | 972503..975325 (-) | 2823 | WP_014168220.1 | excinuclease ABC subunit UvrA | - |
| V1589_RS04705 (V1589_04700) | ssb | 975577..976104 (+) | 528 | WP_020882840.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| V1589_RS04710 (V1589_04705) | - | 976168..976449 (-) | 282 | WP_020882839.1 | YjcB family protein | - |
| V1589_RS04715 (V1589_04710) | - | 976939..978339 (+) | 1401 | WP_032681915.1 | sensor domain-containing diguanylate cyclase | - |
| V1589_RS04720 (V1589_04715) | - | 978679..980244 (+) | 1566 | WP_025206387.1 | EAL domain-containing protein | - |
| V1589_RS04725 (V1589_04720) | soxS | 980251..980577 (-) | 327 | WP_013095071.1 | superoxide response transcriptional regulator SoxS | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18705.74 Da Isoelectric Point: 5.2456
>NTDB_id=931174 V1589_RS04705 WP_020882840.1 975577..976104(+) (ssb) [Enterobacter ludwigii strain ECC-051]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=931174 V1589_RS04705 WP_020882840.1 975577..976104(+) (ssb) [Enterobacter ludwigii strain ECC-051]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75.556 |
100 |
0.777 |
| ssb | Glaesserella parasuis strain SC1401 |
56.522 |
100 |
0.594 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.474 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.366 |