Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1576_RS04635 Genome accession   NZ_CP143746
Coordinates   971125..971649 (+) Length   174 a.a.
NCBI ID   WP_008503384.1    Uniprot ID   A0A156LWB5
Organism   Enterobacter cloacae subsp. dissolvens strain ECC-068     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 966125..976649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1576_RS04615 (V1576_04610) aphA 966449..967162 (+) 714 WP_050859517.1 acid phosphatase AphA -
  V1576_RS04620 (V1576_04615) - 967275..967691 (+) 417 WP_047360211.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1576_RS04625 (V1576_04620) - 967694..968047 (+) 354 WP_014830294.1 MmcQ/YjbR family DNA-binding protein -
  V1576_RS04630 (V1576_04625) uvrA 968051..970873 (-) 2823 WP_014830295.1 excinuclease ABC subunit UvrA -
  V1576_RS04635 (V1576_04630) ssb 971125..971649 (+) 525 WP_008503384.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1576_RS04640 (V1576_04635) - 971712..971993 (-) 282 WP_008503385.1 YjcB family protein -
  V1576_RS04645 (V1576_04640) - 972665..974230 (+) 1566 WP_043951547.1 EAL domain-containing protein -
  V1576_RS04650 (V1576_04645) soxS 974237..974563 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  V1576_RS04655 (V1576_04650) soxR 974661..975119 (+) 459 WP_013095072.1 redox-sensitive transcriptional activator SoxR -
  V1576_RS04660 (V1576_04655) - 975433..976104 (+) 672 WP_047360213.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18593.60 Da        Isoelectric Point: 5.2456

>NTDB_id=931151 V1576_RS04635 WP_008503384.1 971125..971649(+) (ssb) [Enterobacter cloacae subsp. dissolvens strain ECC-068]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=931151 V1576_RS04635 WP_008503384.1 971125..971649(+) (ssb) [Enterobacter cloacae subsp. dissolvens strain ECC-068]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAATACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAATCCGCACCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A156LWB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368