Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1576_RS02340 Genome accession   NZ_CP143746
Coordinates   485848..487368 (+) Length   506 a.a.
NCBI ID   WP_063411901.1    Uniprot ID   -
Organism   Enterobacter cloacae subsp. dissolvens strain ECC-068     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 480848..492368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1576_RS02315 (V1576_02310) ilvE 482414..483343 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  V1576_RS02320 (V1576_02315) ilvM 483362..483625 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  V1576_RS02325 (V1576_02320) ilvG 483622..485268 (-) 1647 WP_182380929.1 acetolactate synthase 2 catalytic subunit -
  V1576_RS02330 (V1576_02325) ilvX 485271..485321 (-) 51 WP_102046757.1 peptide IlvX -
  V1576_RS02335 (V1576_02330) ilvL 485408..485506 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1576_RS02340 (V1576_02335) comM 485848..487368 (+) 1521 WP_063411901.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1576_RS02345 (V1576_02340) - 487401..487739 (-) 339 WP_013099290.1 DUF413 domain-containing protein -
  V1576_RS02350 (V1576_02345) hdfR 487858..488679 (+) 822 WP_014833736.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55070.01 Da        Isoelectric Point: 6.9164

>NTDB_id=931146 V1576_RS02340 WP_063411901.1 485848..487368(+) (comM) [Enterobacter cloacae subsp. dissolvens strain ECC-068]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAYLEGRHELSEPEETEDILPESPDDLSDIIGQVQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIYSLVSSASLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIHG
ESTAKVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=931146 V1576_RS02340 WP_063411901.1 485848..487368(+) (comM) [Enterobacter cloacae subsp. dissolvens strain ECC-068]
ATGTCACTGTCAGTTGTTTATACGCGCGCGGCTATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACACTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGGGATCGGGTACGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCTGCAAAGAAGATCACGATCAATCTTGCTCCCGCAGATCTGCCCAAAGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACAGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCGGAGAAAGGTTGCCTGGTCGCGGGGCATTTG
CAGGAGGTCTGCGCATACCTTGAAGGCCGACATGAGCTGTCTGAACCGGAAGAAACGGAAGATATCCTGCCAGAAAGTCC
GGATGACCTCAGCGATATTATCGGGCAGGTGCAGGGGAAGCGGGCGCTGGAGATCACCGCTGCCGGGGGACATAACCTGT
TGCTGATAGGGCCGCCGGGAACGGGGAAAACCATGCTGGCGAGCAGGCTGAACGGGTTATTGCCGCCACTCAATAATCAT
GAGGCACTTGAAAGCGCTGCGATATACAGCCTGGTGAGTTCTGCCTCGTTGCACAAACAGTGGCGACGTCGGCCTTTTCG
CTCTCCACATCATAGTGCCTCCCTGACGGCCATGGTCGGCGGTGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTCGATGAGCTGCCTGAGTTTGAACGCCGCGTTCTGGATGCGCTGCGGGAACCCATCGAATCG
GGAGAAATCCATATCTCCCGCACGCGCGCTAAAATAAGCTACCCGGCACAATTCCAGCTGGTTGCCGCCATGAATCCCAG
CCCATCAGGCCATTATCAGGGGAATCATAATCGCTGCACGCCTGAGCAAACGCTGCGCTATCTGGGAAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCCTTACCTCCCCCTGGTTTACTCAGTCAGACAACGATACACGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTCATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAGGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTACTGAAAGTGGCTCGCACCATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAGGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACCTGCAAAAATTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.789

100

0.595
  comM Glaesserella parasuis strain SC1401

59.172

100

0.593
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439