Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1572_RS02125 Genome accession   NZ_CP143745
Coordinates   429416..430936 (+) Length   506 a.a.
NCBI ID   WP_262802648.1    Uniprot ID   -
Organism   Enterobacter quasiroggenkampii strain ECC-072     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 424416..435936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1572_RS02100 (V1572_02095) ilvE 425983..426912 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  V1572_RS02105 (V1572_02100) ilvM 426931..427194 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  V1572_RS02110 (V1572_02105) ilvG 427191..428837 (-) 1647 WP_262805978.1 acetolactate synthase 2 catalytic subunit -
  V1572_RS02115 (V1572_02110) ilvX 428840..428890 (-) 51 WP_166792073.1 peptide IlvX -
  V1572_RS02120 (V1572_02115) ilvL 428977..429075 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1572_RS02125 (V1572_02120) comM 429416..430936 (+) 1521 WP_262802648.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1572_RS02130 (V1572_02125) - 430967..431305 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  V1572_RS02135 (V1572_02130) hdfR 431424..432245 (+) 822 WP_032675646.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54995.02 Da        Isoelectric Point: 7.1226

>NTDB_id=931125 V1572_RS02125 WP_262802648.1 429416..430936(+) (comM) [Enterobacter quasiroggenkampii strain ECC-072]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRSGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEVIADVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAKVRERVIAAQARQYTRQNRLNARLDNAGIRQFCALNSEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=931125 V1572_RS02125 WP_262802648.1 429416..430936(+) (comM) [Enterobacter quasiroggenkampii strain ECC-072]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCCCTCGGGGTAAAGGCACCGCTTGTTTCCGTAGAGGTGCATTTGAGTAA
TGGACTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAAGCCAGGGATCGCGTCCGTAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGACCTGCCTAAAGAAGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGCTGAGAGGCGTTCCCGGCGCGATATCGGGAGCGCTGGAGGCCATACGATCAGGCC
GGCAAATCATTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCGGAAAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGGCATGAACTGTCCGAACCGGAGGAGTGTGACGAGGTTATAGCCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAGCGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGCCCGCCAGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGTGGGTTACTTCCACCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCTGCCATCTATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCGATGGTCGGCGGCGGGTCTATCCCCGGCCCGGGAGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACTCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAACTGGTCGCTGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGGGAAAGTTATCCGGTC
CGTTCCTCGACCGTTTCGATTTATCTCTCGAAATCCCGCTTCCTCCTCCGGGCCTCCTCAGGCAGACGGGCATCACGGGT
GAAAGCTCTGCGAAGGTACGCGAGCGGGTGATCGCCGCCCAGGCACGACAGTACACTCGCCAGAACAGGCTAAACGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTGCCCTTAACAGTGAGGATGCGGTATGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTATCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGATGTACTGACATT
GAGAGGAAACACTTGCAGGAGGCGCTGAGCTATCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTAGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439