Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1602_RS02085 Genome accession   NZ_CP143739
Coordinates   420869..422389 (+) Length   506 a.a.
NCBI ID   WP_048959813.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain ECC-090     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415869..427389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1602_RS02060 (V1602_02055) ilvE 417435..418364 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  V1602_RS02065 (V1602_02060) ilvM 418383..418646 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  V1602_RS02070 (V1602_02065) ilvG 418643..420289 (-) 1647 WP_192972117.1 acetolactate synthase 2 catalytic subunit -
  V1602_RS02075 (V1602_02070) ilvX 420292..420342 (-) 51 WP_166792073.1 peptide IlvX -
  V1602_RS02080 (V1602_02075) ilvL 420429..420527 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1602_RS02085 (V1602_02080) comM 420869..422389 (+) 1521 WP_048959813.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1602_RS02090 (V1602_02085) - 422417..422755 (-) 339 WP_320716864.1 DUF413 domain-containing protein -
  V1602_RS02095 (V1602_02090) hdfR 422874..423695 (+) 822 WP_028014823.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54965.99 Da        Isoelectric Point: 7.3596

>NTDB_id=931059 V1602_RS02085 WP_048959813.1 420869..422389(+) (comM) [Enterobacter bugandensis strain ECC-090]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDKLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNVEDAAWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ARKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=931059 V1602_RS02085 WP_048959813.1 420869..422389(+) (comM) [Enterobacter bugandensis strain ECC-090]
ATGTCACTGTCAGTTGTTTATACGCGAGCGGCTCTCGGGGTAAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACCACGGTTAAAGAGGCCAGGGACCGCGTTCGTAGCGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCTCCCGCTGACCTGCCCAAAGAGGGTGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCACTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCGTTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGTCTCATCGCCGGGCATCTT
CAGGAAGTGTGCGCCTGGCTGGAAGGCCGCCATGAACTGTCCGAGCCGGAAGAGTGCGACGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCAGCGGGTGGGCACAATCTCC
TGCTGATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCGAGCAGGCTAAGCGGGTTGCTCCCGCCGCTTAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATCTATAGCCTGATCGGTTCGACGTCGTTGCACAAACAGTGGCGTCGACGTCCCTTTCG
TTCCCCGCATCATAGCGCGTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCGCTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGTTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGGGAGCCCATTGAATCC
GGTGAGATACATATTTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
TCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCTGGCC
CGTTTCTCGACCGTTTCGATTTATCACTGGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGATAAACTGGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATCGCGGCACAGGCGAGACAGTATGCCCGTCAAAACAGGCTGAATGCACG
ACTGGATAATGCAGGGATCCGACAGTTTTGTTCTCTTAACGTTGAAGATGCGGCTTGGCTGGAGGAGACGTTGACGCGCT
TTGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCGGACGTGGAGGGCTGTACTGATATT
GCGAGGAAACACTTGCAGGAAGCGCTGAGCTATCGGGCGATCGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443