Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1584_RS04585 Genome accession   NZ_CP143733
Coordinates   959982..960512 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain ECC-101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 954982..965512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1584_RS04565 (V1584_04570) aphA 955306..956019 (+) 714 WP_017382626.1 acid phosphatase AphA -
  V1584_RS04570 (V1584_04575) - 956132..956548 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1584_RS04575 (V1584_04580) - 956551..956904 (+) 354 WP_032620552.1 MmcQ/YjbR family DNA-binding protein -
  V1584_RS04580 (V1584_04585) uvrA 956908..959730 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  V1584_RS04585 (V1584_04590) ssb 959982..960512 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1584_RS04590 (V1584_04595) - 960573..960854 (-) 282 WP_003860282.1 YjcB family protein -
  V1584_RS04595 (V1584_04600) - 961298..962697 (+) 1400 Protein_881 diguanylate cyclase -
  V1584_RS04600 (V1584_04605) - 962963..964528 (+) 1566 WP_015570189.1 EAL domain-containing protein -
  V1584_RS04605 (V1584_04610) soxS 964535..964861 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  V1584_RS04610 (V1584_04615) soxR 964960..965418 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=930997 V1584_RS04585 WP_006810470.1 959982..960512(+) (ssb) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-101]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=930997 V1584_RS04585 WP_006810470.1 959982..960512(+) (ssb) [Enterobacter hormaechei subsp. xiangfangensis strain ECC-101]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369