Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1581_RS04450 Genome accession   NZ_CP143725
Coordinates   922155..922685 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain ECC-105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 917155..927685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1581_RS04430 (V1581_04420) aphA 917479..918192 (+) 714 WP_041911537.1 acid phosphatase AphA -
  V1581_RS04435 (V1581_04425) - 918305..918721 (+) 417 WP_063943977.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1581_RS04440 (V1581_04430) - 918724..919077 (+) 354 WP_028015174.1 MmcQ/YjbR family DNA-binding protein -
  V1581_RS04445 (V1581_04435) uvrA 919081..921903 (-) 2823 WP_028015175.1 excinuclease ABC subunit UvrA -
  V1581_RS04450 (V1581_04440) ssb 922155..922685 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1581_RS04455 (V1581_04445) - 922746..923027 (-) 282 WP_028015176.1 YjcB family protein -
  V1581_RS04460 (V1581_04450) - 923684..925249 (+) 1566 WP_028015177.1 EAL domain-containing protein -
  V1581_RS04465 (V1581_04455) soxS 925256..925582 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  V1581_RS04470 (V1581_04460) soxR 925681..926139 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  V1581_RS04475 (V1581_04465) - 926427..927098 (+) 672 WP_028015178.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=930930 V1581_RS04450 WP_006810470.1 922155..922685(+) (ssb) [Enterobacter bugandensis strain ECC-105]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=930930 V1581_RS04450 WP_006810470.1 922155..922685(+) (ssb) [Enterobacter bugandensis strain ECC-105]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTAGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369