Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1605_RS04485 Genome accession   NZ_CP143717
Coordinates   938258..938782 (+) Length   174 a.a.
NCBI ID   WP_014068526.1    Uniprot ID   A0A7L7IPM8
Organism   Enterobacter soli strain ECC-115     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 933258..943782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1605_RS04470 (V1605_04460) aphA 933997..934710 (+) 714 WP_166718272.1 acid phosphatase AphA -
  V1605_RS04475 (V1605_04465) - 934827..935180 (+) 354 WP_014068524.1 MmcQ/YjbR family DNA-binding protein -
  V1605_RS04480 (V1605_04470) uvrA 935184..938006 (-) 2823 WP_014068525.1 excinuclease ABC subunit UvrA -
  V1605_RS04485 (V1605_04475) ssb 938258..938782 (+) 525 WP_014068526.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1605_RS04490 (V1605_04480) - 938860..939141 (-) 282 WP_014068527.1 YjcB family protein -
  V1605_RS04495 (V1605_04485) - 939620..941023 (+) 1404 WP_217188762.1 sensor domain-containing diguanylate cyclase -
  V1605_RS04500 (V1605_04490) - 941363..942931 (+) 1569 WP_014068529.1 EAL domain-containing protein -
  V1605_RS04505 (V1605_04495) soxS 942937..943263 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18607.63 Da        Isoelectric Point: 5.2456

>NTDB_id=930885 V1605_RS04485 WP_014068526.1 938258..938782(+) (ssb) [Enterobacter soli strain ECC-115]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEIVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=930885 V1605_RS04485 WP_014068526.1 938258..938782(+) (ssb) [Enterobacter soli strain ECC-115]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCTGAAGTAGCGGGTGAGTACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGCGCTGAAAAATACACGACCGAAATCGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGTGCACAGTCTCGTCCGCAGCAACAGTCTGCTCCGGCGCCA
TCTAATGAACCGCCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L7IPM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.782
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.753

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.489
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.362