Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1605_RS02280 Genome accession   NZ_CP143717
Coordinates   466425..467945 (+) Length   506 a.a.
NCBI ID   WP_014072312.1    Uniprot ID   -
Organism   Enterobacter soli strain ECC-115     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 461425..472945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1605_RS02255 (V1605_02250) ilvE 462989..463918 (-) 930 WP_166718541.1 branched-chain-amino-acid transaminase -
  V1605_RS02260 (V1605_02255) ilvM 463937..464200 (-) 264 WP_014072310.1 acetolactate synthase 2 small subunit -
  V1605_RS02265 (V1605_02260) ilvG 464197..465843 (-) 1647 WP_217188696.1 acetolactate synthase 2 catalytic subunit -
  V1605_RS02270 (V1605_02265) ilvX 465846..465896 (-) 51 WP_166792073.1 peptide IlvX -
  V1605_RS02275 (V1605_02270) ilvL 465983..466081 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1605_RS02280 (V1605_02275) comM 466425..467945 (+) 1521 WP_014072312.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1605_RS02285 (V1605_02280) - 467978..468316 (-) 339 WP_014072313.1 DUF413 domain-containing protein -
  V1605_RS02290 (V1605_02285) hdfR 468435..469256 (+) 822 WP_014072314.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55187.29 Da        Isoelectric Point: 7.3089

>NTDB_id=930880 V1605_RS02280 WP_014072312.1 466425..467945(+) (comM) [Enterobacter soli strain ECC-115]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPARKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFIGELALTGSLRGVPGAISGALEAISAGRQIIVANENSPEVSLIAEKGCLIAGHL
QEVCAYLEGRHELAEPREAEDILPDNRDDLRDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNR
EALESAAIFSLVSSTSLQKQWRQRPFRSPHHSASLAAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQNNGQG
ITSAEVRERVITAQANQYARQCKLNAYLDNAEIRRFCHLAPEDALWLEDTLVRFGLSIRAWQRLLKVARTIADVEGCIEI
QRQHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=930880 V1605_RS02280 WP_014072312.1 466425..467945(+) (comM) [Enterobacter soli strain ECC-115]
ATGTCACTGTCGGTTGTTTATACACGAGCCGCTATTGGTGTGAAGGCACCACTGATTTCTGTTGAAGTACATCTGAGTAA
TGGCCTGCCAGGGCTCACTCTCGTTGGGCTACCAGAAACCACCGTAAAAGAGGCCAGGGATCGGGTGCGTAGCGCAATCA
TCAATAGCGGTTATACCTTCCCTGCCAGAAAAATTACCATCAACCTGGCACCCGCTGACTTACCCAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATTGCGCTTCTCGCCGCTTCTGAGCAGCTGAATACCACCAGGCTAGGCTCGTATGAGTTCAT
CGGCGAACTTGCTCTTACAGGCTCATTAAGAGGCGTTCCTGGAGCGATCTCAGGTGCCCTGGAAGCGATAAGCGCAGGCC
GACAAATCATTGTGGCCAATGAAAATTCTCCTGAAGTGAGCCTGATTGCAGAAAAAGGGTGCCTGATAGCCGGCCATCTA
CAGGAGGTTTGTGCGTACCTGGAGGGGCGACATGAGCTTGCCGAACCACGGGAGGCCGAAGATATCCTGCCGGATAACCG
GGACGATCTCCGCGATATTATTGGTCAGGAACAGGGTAAGCGGGCCCTGGAGATTACCGCCGCAGGTGGGCATAACCTCT
TATTGATTGGCCCACCAGGAACAGGCAAAACAATGCTGGCAAGCCGCCTGAATGGCTTACTGCCGCCATTAAACAATCGC
GAGGCGCTTGAAAGCGCCGCCATATTTAGCCTCGTTAGCTCAACATCACTGCAAAAGCAGTGGCGGCAGCGCCCCTTTCG
CTCCCCGCACCACAGTGCTTCTTTGGCAGCAATGGTGGGTGGGGGCTCAATCCCCGGGCCTGGCGAAATATCGCTGGCGC
ACAATGGCATCCTGTTTCTTGATGAACTGCCTGAATTTGAACGACGTGTTCTGGACGCCCTGCGTGAGCCGATTGAGTCG
GGACAAATACACATCTCCCGGACACGAGCAAAAATCAGTTACCCTGCACGGTTCCAGCTGGTTGCTGCGATGAACCCCAG
TCCAACAGGACACTACCAGGGGAACCATAACCGGTGTACGCCCGAGCAGACGCTTCGCTATCTTGGAAAGCTATCAGGTC
CTTTCCTCGACCGGTTCGATTTATCGCTGGAGATCCCTCTTCCGCCCCCCGGGCTACTCAGCCAGAACAACGGACAGGGA
ATAACTTCAGCGGAAGTGCGCGAAAGAGTTATCACTGCCCAGGCGAATCAATATGCCCGTCAGTGCAAACTCAATGCTTA
TCTTGATAATGCGGAAATTCGGCGATTCTGCCATCTGGCCCCGGAGGATGCACTTTGGCTGGAGGATACCCTGGTACGGT
TTGGGCTTTCCATTCGTGCCTGGCAGCGTTTATTGAAAGTCGCCAGGACTATCGCTGATGTTGAAGGGTGTATTGAAATC
CAGAGGCAGCATCTGCAAGAAGCATTGAGCTATCGTGCAATCGACCGTTTGCTACTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.136

100

0.595
  comM Glaesserella parasuis strain SC1401

59.369

100

0.595
  comM Vibrio campbellii strain DS40M4

59.127

99.605

0.589
  comM Vibrio cholerae strain A1552

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

50.704

98.221

0.498
  comM Legionella pneumophila strain ERS1305867

50.704

98.221

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.745

100

0.431