Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1580_RS02085 Genome accession   NZ_CP143687
Coordinates   419982..421502 (+) Length   506 a.a.
NCBI ID   WP_395278063.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain ECC-190     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 414982..426502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1580_RS02060 (V1580_02055) ilvE 416549..417478 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  V1580_RS02065 (V1580_02060) ilvM 417497..417760 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  V1580_RS02070 (V1580_02065) ilvG 417757..419403 (-) 1647 WP_182035072.1 acetolactate synthase 2 catalytic subunit -
  V1580_RS02075 (V1580_02070) ilvX 419406..419456 (-) 51 WP_166792073.1 peptide IlvX -
  V1580_RS02080 (V1580_02075) ilvL 419543..419641 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1580_RS02085 (V1580_02080) comM 419982..421502 (+) 1521 WP_395278063.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1580_RS02090 (V1580_02085) - 421530..421868 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  V1580_RS02095 (V1580_02090) hdfR 421987..422808 (+) 822 WP_028014823.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54969.98 Da        Isoelectric Point: 7.3596

>NTDB_id=930639 V1580_RS02085 WP_395278063.1 419982..421502(+) (comM) [Enterobacter bugandensis strain ECC-190]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTTEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTDKLG
ESSAHVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNVEDAAWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ARKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=930639 V1580_RS02085 WP_395278063.1 419982..421502(+) (comM) [Enterobacter bugandensis strain ECC-190]
ATGTCACTGTCAGTTGTTTATACGCGAGCGGCTCTCGGGGTAAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCCGGACTCACGCTTGTCGGGTTACCTGAAACCACGGTTAAAGAGGCCAGGGACCGCGTTCGTAGCGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCTCCCGCTGACCTGCCCAAAGAGGGTGGGCGA
TACGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCACTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCGTTGTTGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGTCTCATCGCCGGGCATCTT
CAGGAAGTGTGCGCCTGGCTGGAAGGCCGCCACGAACTGTCCGAGCCGGAAGAGTGCGACGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAGGAACAAGGGAAACGGGCGCTGGAGATTACAGCAGCGGGTGGTCACAATCTCC
TGCTGATCGGCCCGCCGGGTACGGGCAAAACCATGCTGGCGAGCAGGCTAAGCGGGTTGCTCCCGCCGCTTAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATCTATAGCCTGATCGGTTCGACGTCGTTGCACAAACAGTGGCGTCGACGTCCCTTTCG
TTCGCCGCATCATAGCGCGTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCAC
ACAATGGCATTCTGTTTCTCGATGAGTTGCCTGAGTTTGAGCGCCGCGTGCTGGATGCGCTGAGGGAGCCCATTGAATCC
GGTGAGATACACATTTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCGTTTTCAGCTCGTGGCGGCGATGAACCCCAG
TCCGACGGGGCATTATCAGGGCAACCATAACCGCTGTACGACAGAGCAGACGCTGCGTTATCTGGGAAAGCTGTCTGGCC
CGTTTCTCGACCGTTTCGATTTATCACTGGAAATCCCCCTTCCGCCGCCGGGCCTGCTCAGGCAGACGGATAAACTGGGT
GAAAGCTCCGCGCATGTTCGCGAGCGGGTTATCGCGGCACAGGCGAGACAGTATGCCCGTCAAAACAGGCTGAATGCACG
ACTGGATAATGCAGGGATCCGACAGTTTTGTTCTCTTAACGTTGAAGATGCGGCTTGGCTGGAGGAGACGTTGACGCGCT
TCGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCGGACGTGGAGGGCTGTACTGATATT
GCGAGGAAACACTTGCAGGAAGCGCTGAGCTATCGGGCGATCGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Vibrio campbellii strain DS40M4

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio cholerae strain A1552

58.25

99.407

0.579
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443