Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1603_RS04610 Genome accession   NZ_CP143680
Coordinates   996534..997058 (+) Length   174 a.a.
NCBI ID   WP_395313553.1    Uniprot ID   -
Organism   Enterobacter sp. ECC-219     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 991534..1002058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1603_RS04590 (V1603_04575) aphA 991860..992573 (+) 714 WP_116343843.1 acid phosphatase AphA -
  V1603_RS04595 (V1603_04580) - 992686..993102 (+) 417 WP_116343844.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V1603_RS04600 (V1603_04585) - 993105..993458 (+) 354 WP_116343845.1 MmcQ/YjbR family DNA-binding protein -
  V1603_RS04605 (V1603_04590) uvrA 993461..996283 (-) 2823 WP_116343846.1 excinuclease ABC subunit UvrA -
  V1603_RS04610 (V1603_04595) ssb 996534..997058 (+) 525 WP_395313553.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V1603_RS04615 (V1603_04600) - 997118..997399 (-) 282 WP_048957473.1 YjcB family protein -
  V1603_RS04620 (V1603_04605) - 997463..997714 (+) 252 WP_131728597.1 hypothetical protein -
  V1603_RS04625 (V1603_04610) - 998054..999619 (+) 1566 WP_163330905.1 EAL domain-containing protein -
  V1603_RS04630 (V1603_04615) soxS 999625..999951 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  V1603_RS04635 (V1603_04620) soxR 1000050..1000508 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  V1603_RS04640 (V1603_04625) - 1000875..1001546 (+) 672 WP_116343848.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=930575 V1603_RS04610 WP_395313553.1 996534..997058(+) (ssb) [Enterobacter sp. ECC-219]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPVGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=930575 V1603_RS04610 WP_395313553.1 996534..997058(+) (ssb) [Enterobacter sp. ECC-219]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTAGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGTCGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCTGCCCCG
TCTAACGAACCGCCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.782
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.368