Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1603_RS02280 Genome accession   NZ_CP143680
Coordinates   479014..480534 (+) Length   506 a.a.
NCBI ID   WP_395313448.1    Uniprot ID   -
Organism   Enterobacter sp. ECC-219     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474014..485534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1603_RS02255 (V1603_02250) ilvE 475580..476509 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  V1603_RS02260 (V1603_02255) ilvM 476528..476791 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  V1603_RS02265 (V1603_02260) ilvG 476788..478434 (-) 1647 WP_116343684.1 acetolactate synthase 2 catalytic subunit -
  V1603_RS02270 (V1603_02265) ilvX 478437..478487 (-) 51 WP_192985207.1 peptide IlvX -
  V1603_RS02275 (V1603_02270) ilvL 478574..478672 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1603_RS02280 (V1603_02275) comM 479014..480534 (+) 1521 WP_395313448.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1603_RS02285 (V1603_02280) - 480559..480897 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  V1603_RS02290 (V1603_02285) hdfR 481016..481837 (+) 822 WP_116343682.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55006.90 Da        Isoelectric Point: 7.1544

>NTDB_id=930570 V1603_RS02280 WP_395313448.1 479014..480534(+) (comM) [Enterobacter sp. ECC-219]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIVVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEAIADAPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTRTQG
ESSATVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=930570 V1603_RS02280 WP_395313448.1 479014..480534(+) (comM) [Enterobacter sp. ECC-219]
ATGTCACTGTCAGTTGTTTATACGCGAGCGGCTCTCGGGGTGAAGGCTCCGCTTATTTCCGTAGAGGTTCATTTGAGTAA
TGGCCTCCCCGGACTCACGCTTGTTGGGTTACCTGAAACCACGGTCAAAGAGGCCAGGGACCGCGTTCGTAGTGCAATAA
TAAACAGCGGTTATACCTTCCCCGCAAAGAAGATCACCATCAACCTTGCCCCCGCTGACCTGCCTAAAGAGGGTGGGCGA
TATGATTTACCTATCGCAATTGCGCTTCTCGCGGCTTCTGAGCAACTTAATACGACCAGGCTAGGCTCGTACGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCATTGAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCAATACGTGCAGGGC
GGCAAATCGTTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGCCTCATCGCAGGGCATCTC
CAGGAAGTGTGCGCCTGGCTGGAGGGCCGGCACGAACTGTCCGAGCCGGAAGAGTGTGACGAGGCTATAGCGGATGCGCC
AGAAGACCTCAGCGAGATCATGGGACAAGAGCAAGGGAAACGGGCGCTGGAGATTACGGCAGCGGGTGGTCACAATCTTC
TGCTGATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCAAGCAGGCTGAGCGGGTTGCTCCCGCCGCTTAATAACCAT
GAAGCGCTGGAAAGCGCTGCCATCTATAGCCTTATCAGTTCAACGTCGTTGCATAAACAGTGGCGCCGCCGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCGCTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCAC
ACAATGGCATTCTGTTCCTCGATGAGCTGCCTGAATTTGAGCGGCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGTGAGATACATATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCCCAGTTTCAGCTTGTCGCAGCGATGAATCCCAG
CCCGACGGGTCACTACCAGGGCAACCATAACCGCTGTACGCCAGAGCAAACGCTGCGCTATCTGGGAAAGCTTTCCGGCC
CGTTCCTCGATCGTTTCGATTTATCACTGGAAATCCCCCTTCCGCCGCCGGGCCTGCTAAGGCAGACGCGTACACAGGGT
GAAAGCTCAGCGACTGTACGCGAGCGGGTTATCGCGGCGCAGACACGGCAGTACGCTCGACAAAACAGACTGAATGCACG
GCTGGATAATGCCGGGATTCGACAGTTTTGTTCTCTTAACGCTGAAGATGCGGGATGGCTGGAAGAGACGCTGACGCGCT
TTGGGCTTTCCATACGTGCGTGGCAGCGCTTGTTAAAAGTAGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAGAGGAAACATTTGCAGGAAGCGTTGAGCTATCGGGCGATCGATCGTTTGCTTTTGCATCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

58.847

99.407

0.585
  comM Haemophilus influenzae Rd KW20

57.957

100

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.314

100

0.447