Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1587_RS02100 Genome accession   NZ_CP143660
Coordinates   422313..423833 (+) Length   506 a.a.
NCBI ID   WP_371899679.1    Uniprot ID   -
Organism   Enterobacter sp. ECC-249     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 417313..428833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1587_RS02075 (V1587_02065) ilvE 418878..419807 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  V1587_RS02080 (V1587_02070) ilvM 419826..420089 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  V1587_RS02085 (V1587_02075) ilvG 420086..421732 (-) 1647 WP_371899680.1 acetolactate synthase 2 catalytic subunit -
  V1587_RS02090 (V1587_02080) ilvX 421735..421785 (-) 51 WP_166792073.1 peptide IlvX -
  V1587_RS02095 (V1587_02085) ilvL 421872..421970 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1587_RS02100 (V1587_02090) comM 422313..423833 (+) 1521 WP_371899679.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1587_RS02105 (V1587_02095) - 423864..424202 (-) 339 WP_023309658.1 DUF413 domain-containing protein -
  V1587_RS02110 (V1587_02100) hdfR 424321..425142 (+) 822 WP_094935534.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54934.96 Da        Isoelectric Point: 7.1226

>NTDB_id=930459 V1587_RS02100 WP_371899679.1 422313..423833(+) (comM) [Enterobacter sp. ECC-249]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDEVLADVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPVES
GEIHISRARAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSAEVRKRVIAAQTRQYARQNRLNARLDNAGIRQFCSLNVEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=930459 V1587_RS02100 WP_371899679.1 422313..423833(+) (comM) [Enterobacter sp. ECC-249]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGTAA
CGGGCTACCCGGACTCACGCTTGTCGGGTTACCTGAAACGACGGTTAAAGAAGCCAGGGACCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACTATCAACCTTGCGCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTGCCTATCGCAATTGCCCTTCTGGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCATATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCGGGAGCGCTGGAAGCCATACGTGCAGGGC
GGCAAATCATTGTGGCCAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAAAAGGGGTGTCTCATCGCCGGGCATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAACCTGAGGAGTGTGACGAGGTTTTAGCCGACGTTCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAGCGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGTCCGCCAGGTACGGGGAAAACGATGCTGGCGAGCAGGCTGAGTGGGTTGCTTCCACCGCTCAATAACCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGCCGTCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGTGAGATCTCACTGGCAC
ACAATGGCATTCTGTTTCTTGATGAGCTGCCCGAGTTTGAGCGCCGCGTGTTGGATGCGCTGAGAGAACCTGTTGAATCC
GGTGAGATACATATCTCACGCGCGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCTGCGATGAACCCCAG
CCCGACGGGTCACTACCAGGGAAACCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCTCTCGAAATCCCGCTTCCTCCTCCGGGTCTGCTCAGGCAAACGGGCATAACGGGT
GAAAGCTCAGCGGAGGTACGCAAGCGGGTGATTGCGGCCCAGACGAGGCAGTACGCTCGTCAGAACAGGCTGAATGCACG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACGTTGAGGATGCGGGATGGCTGGAGGAGACGTTGACGCGGT
TCGGGCTGTCCATACGTGCGTGGCAGCGTTTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGGAAACATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTACTGCTGCATTTGCAGAAATTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443