Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V1586_RS02020 Genome accession   NZ_CP143650
Coordinates   410781..412301 (+) Length   506 a.a.
NCBI ID   WP_208283589.1    Uniprot ID   -
Organism   Enterobacter sichuanensis strain ECC-263     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 405781..417301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1586_RS01995 (V1586_01990) ilvE 407349..408278 (-) 930 WP_013099287.1 branched-chain-amino-acid transaminase -
  V1586_RS02000 (V1586_01995) ilvM 408297..408560 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  V1586_RS02005 (V1586_02000) ilvG 408557..410203 (-) 1647 WP_208283588.1 acetolactate synthase 2 catalytic subunit -
  V1586_RS02010 (V1586_02005) ilvX 410206..410256 (-) 51 WP_102046757.1 peptide IlvX -
  V1586_RS02015 (V1586_02010) ilvL 410343..410441 (-) 99 WP_001311244.1 ilv operon leader peptide -
  V1586_RS02020 (V1586_02015) comM 410781..412301 (+) 1521 WP_208283589.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V1586_RS02025 (V1586_02020) - 412327..412665 (-) 339 WP_025757596.1 DUF413 domain-containing protein -
  V1586_RS02030 (V1586_02025) hdfR 412784..413605 (+) 822 WP_025757599.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54994.93 Da        Isoelectric Point: 7.3876

>NTDB_id=930392 V1586_RS02020 WP_208283589.1 410781..412301(+) (comM) [Enterobacter sichuanensis strain ECC-263]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTSRLGSYEFIGELALTGALRGVPGAISGALEAIRAGREIIIANENSAEVSLIAEKGCLIAGHL
QEVCAHLEGRHRLSEPEEAEDIPPESTDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLSNH
EALESAAIVSLVSSVSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSIRG
ESSVTVRDRVIAAQARQYRRQNKLNARLDNAEIRQFCQLKAEDATWLEETLARFGLSIRAWQRLLKVARTIADVESSHAI
ERQHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=930392 V1586_RS02020 WP_208283589.1 410781..412301(+) (comM) [Enterobacter sichuanensis strain ECC-263]
ATGTCACTGTCAGTTGTTTATACGCGTGCAGCTATTGGGGTAAAAGCACCGCTTATTTCTGTGGAGGTTCATCTGAGCAA
TGGACTCCCTGGCTTAACGCTTGTCGGCTTGCCAGAGACTACGGTGAAAGAAGCCAGAGATCGGGTCCGCAGCGCCATTA
TCAATAGCGGTTATACCTTCCCGGCGAAAAAGATTACTATCAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTATTGCGCTTCTCGCCGCTTCTGAACAGCTTAATACCTCCAGGCTAGGCTCGTACGAGTTCAT
CGGTGAACTGGCGCTTACAGGCGCACTGAGAGGCGTTCCTGGCGCTATCTCTGGTGCGCTGGAAGCCATACGTGCCGGTC
GGGAAATCATTATTGCCAATGAAAACAGTGCTGAAGTGAGCCTGATAGCCGAAAAAGGGTGCCTTATTGCCGGGCATTTG
CAGGAGGTCTGCGCCCATCTTGAAGGGCGGCATAGGTTGTCAGAACCCGAGGAAGCGGAAGATATACCGCCTGAAAGTAC
CGACGATCTCAGCGATATTATCGGTCAGGAGCAGGGAAAGCGAGCGCTGGAGATCACCGCTGCCGGCGGGCATAACTTGT
TACTGATTGGCCCGCCGGGTACCGGAAAAACGATGCTGGCGAGCCGGTTGAATGGTTTACTTCCACCACTCAGTAACCAT
GAAGCACTCGAAAGCGCTGCGATAGTGAGCCTGGTGAGTTCAGTGTCGTTGCAAAAACAGTGGCGACGTCGCCCTTTCCG
CTCTCCGCACCACAGCGCGTCCCTGACGGCCATGGTCGGAGGAGGTTCCATTCCGGGGCCAGGAGAGATTTCACTGGCAC
ATAACGGCATCCTGTTTCTTGATGAACTACCTGAGTTTGAGCGGCGCGTGCTGGATGCCCTAAGGGAGCCGATTGAATCC
GGAGAGATACATATCTCACGTACCCGGGCCAAAATAAGCTATCCGGCACAGTTCCAGCTGGTTGCGGCAATGAACCCCAG
CCCGTCAGGTCATTATCAGGGGAATCACAACCGCTGTACGCCTGAACAAACGCTGCGATATCTGGGAAAGTTATCAGGCC
CTTTCCTGGATCGTTTCGATTTATCCCTGGAAATCCCTTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGTATCAGAGGA
GAGTCTTCAGTAACGGTTCGCGATCGGGTTATTGCTGCTCAGGCCCGGCAGTACAGGCGTCAAAATAAACTGAACGCCCG
TCTGGATAATGCTGAGATCCGACAGTTTTGCCAGTTAAAGGCTGAGGATGCGACGTGGCTGGAGGAAACGTTGGCGCGCT
TCGGGCTCTCCATTCGTGCATGGCAGCGTCTTTTAAAAGTGGCTCGTACTATCGCCGATGTGGAAAGCAGTCATGCAATT
GAGAGACAGCATCTGCAGGAAGCGTTGAGCTATCGGGCGATCGACCGTTTACTTTTGCACCTGCAAAAGTTACTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435