Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACB340_RS09105 Genome accession   NZ_CP167005
Coordinates   1820157..1820753 (-) Length   198 a.a.
NCBI ID   WP_002982180.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815157..1825753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB340_RS09070 (ACB340_09070) - 1815216..1815521 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ACB340_RS09075 (ACB340_09075) ruvX 1815533..1815952 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ACB340_RS09080 (ACB340_09080) - 1815949..1816218 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ACB340_RS09085 (ACB340_09085) spx 1816333..1816731 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ACB340_RS09090 (ACB340_09090) recA 1817022..1818158 (-) 1137 WP_023612576.1 recombinase RecA Machinery gene
  ACB340_RS09095 (ACB340_09095) cinA 1818247..1819518 (-) 1272 WP_010922754.1 competence/damage-inducible protein A Machinery gene
  ACB340_RS09100 (ACB340_09100) - 1819587..1820147 (-) 561 WP_023079151.1 DNA-3-methyladenine glycosylase I -
  ACB340_RS09105 (ACB340_09105) ruvA 1820157..1820753 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA Machinery gene
  ACB340_RS09110 (ACB340_09110) - 1820755..1821975 (-) 1221 WP_002991361.1 MFS transporter -
  ACB340_RS09115 (ACB340_09115) hexB 1821986..1823968 (-) 1983 WP_002991363.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21829.16 Da        Isoelectric Point: 6.2537

>NTDB_id=930110 ACB340_RS09105 WP_002982180.1 1820157..1820753(-) (ruvA) [Streptococcus pyogenes strain Isolate 27]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=930110 ACB340_RS09105 WP_002982180.1 1820157..1820753(-) (ruvA) [Streptococcus pyogenes strain Isolate 27]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAACGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAGACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424