Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q1I82_RS01470 Genome accession   NZ_CP143633
Coordinates   311538..313064 (-) Length   508 a.a.
NCBI ID   WP_330131033.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain 8M34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 306538..318064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1I82_RS01445 prpB 306989..307867 (-) 879 WP_037431229.1 methylisocitrate lyase -
  Q1I82_RS01450 - 307932..308720 (-) 789 WP_047540108.1 GntR family transcriptional regulator -
  Q1I82_RS01455 - 309053..309517 (+) 465 WP_099457107.1 DUF523 domain-containing protein -
  Q1I82_RS01460 - 309586..310527 (-) 942 WP_037431237.1 acyltransferase -
  Q1I82_RS01465 - 310535..311437 (-) 903 WP_037413712.1 acyltransferase -
  Q1I82_RS01470 comM 311538..313064 (-) 1527 WP_330131033.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q1I82_RS01475 - 313281..314396 (+) 1116 WP_330131034.1 DUF1963 domain-containing protein -
  Q1I82_RS01480 - 314402..314998 (-) 597 WP_330131035.1 response regulator transcription factor -
  Q1I82_RS01485 - 314998..316077 (-) 1080 WP_330131036.1 sensor histidine kinase -
  Q1I82_RS01490 - 316162..316866 (-) 705 WP_330131037.1 hypothetical protein -
  Q1I82_RS01495 - 317052..318002 (-) 951 WP_037426425.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55216.58 Da        Isoelectric Point: 8.0336

>NTDB_id=930073 Q1I82_RS01470 WP_330131033.1 311538..313064(-) (comM) [Shewanella xiamenensis strain 8M34]
MAIACVHTRASCGVEAPEVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASEQIPRTSLKDTEFVGELALSGQIRHCQGLLPAIIAAKRHNNQLILPLDNRHDAELVGYPKVYFGSHL
QSLAAFLHGQAPLPMLEQQLEWIADEPAQSTPCLSEVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGINIKPQDFLKRPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDGPNRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQPT
STSETSDEIAKRVKRARDSQLARAGVLNSELSGKQLKQFGGLSDADLSFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHLAQALGYRAMDKLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=930073 Q1I82_RS01470 WP_330131033.1 311538..313064(-) (comM) [Shewanella xiamenensis strain 8M34]
ATGGCGATAGCCTGCGTGCATACCCGAGCCAGTTGTGGGGTTGAAGCACCCGAAGTCACGGTTGAAGTGCATCTCAGTAA
TGGCCTGCCGGCTTTTAATCTGGTGGGTTTGCCAGAAGCCTCTGTCAAAGAAGCCCGCGAGCGGGTACGCAGCGCCTTGA
TCAATGCGGGATTCGAGTTTCCGATGCGGCGAATAACCGTTAATCTCGCGCCTGCGGATTTACCCAAGCAAGGCGGCCGC
TACGATTTACCTATCGCCATCGGTATTTTGGCTGCTTCAGAGCAAATCCCCCGCACAAGCCTTAAGGATACCGAATTTGT
CGGCGAACTTGCCCTCTCAGGGCAAATCCGCCACTGCCAAGGATTGCTACCAGCAATCATTGCGGCTAAACGCCATAATA
ATCAGTTAATTCTGCCACTCGATAATCGCCACGATGCCGAGTTAGTTGGCTATCCTAAGGTCTACTTTGGCTCCCATTTG
CAAAGTTTAGCGGCGTTTCTCCATGGACAAGCGCCACTTCCCATGCTGGAGCAGCAGCTTGAGTGGATCGCGGATGAGCC
GGCGCAGTCCACGCCTTGCCTTAGCGAGGTGATAGGCCAATACCAAGCTAAACAAGCGCTTGAGATCGCCGCCGCAGGCA
ACCATAACCTATTAATGCTAGGTCCGCCGGGTACTGGCAAAACCATGCTAGCCAGCCGCATGATGGCGCTATTACCTGCA
CTCAATTATGAAGAAGCCTTAGAAGTGGCTGCAATTCATTCCGTCGCGGGCATCAATATCAAACCGCAGGACTTTCTTAA
GCGACCATTTCGCGCGCCGCACCATACTTGCTCCTCAATTTCCTTAGTCGGAGGTGGCAGTATTCCTAAGCCTGGCGAAA
TTTCATTGGCCCATCGCGGAGTATTATTTCTGGATGAAGTCGCTGAATTTCCAAGAAAAGTGCTCGACTGTTTGCGTGAA
CCGATGGAAACAGGTGAAGTGGTGATCTCCCGCGCGGCGGCAAAACTGACCTTTTTAAGCCGCTTTCAATTGATCGCCGC
CATGAACCCCAGCCCGAGCGGCGATATCGACGGCCCCAATCGCGCTACGCCCGATCAGGTTCAGCGTTATCTCGCTAGAC
TCTCGGGACCCTTTTTAGATAGATTCGACCTCACCATCGAAGTCCCCAAACTCCCCGCGGGCACACTCACACAACCAACA
AGTACCAGCGAAACCAGTGATGAAATCGCTAAACGAGTCAAACGCGCCCGCGATAGCCAACTCGCGCGAGCTGGCGTGCT
CAACAGTGAACTATCGGGAAAACAGCTAAAGCAATTCGGCGGCCTTAGCGACGCCGACTTAAGCTTTTTAGAACAGAGTG
TCGTTAAACTAGGATTATCCGTGCGCAGCTTTCATCGTATTCAACGGGTTGCCCGCACCATTGCCGACCTTGAGCAGGCC
CCCAATACCGAAAGACGCCACCTCGCCCAAGCCTTAGGATATCGGGCTATGGATAAATTATTGGCCCGTTTATCCCAACA
GTATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.945

100

0.565
  comM Haemophilus influenzae Rd KW20

56.016

99.803

0.559
  comM Glaesserella parasuis strain SC1401

55.929

99.606

0.557
  comM Vibrio campbellii strain DS40M4

54.921

100

0.549
  comM Legionella pneumophila str. Paris

46.85

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.85

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

99.016

0.431